Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 4.0e-57 224.6 114 100.0
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 2.1e-21 105.9 115 53.9
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.1e-18 95.9 107 54.2
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.8e-18 95.5 109 50.5
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.4e-17 92.4 116 50.0
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.1e-17 92.0 123 46.3
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.1e-17 92.0 123 46.3
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.1e-14 83.6 102 49.0
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 7.1e-14 80.9 112 44.6
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.6e-13 79.7 101 49.5
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.5e-13 78.6 103 44.7
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 7.9e-13 77.4 107 48.6
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.0e-12 77.0 99 50.5
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 3.0e-12 75.5 96 50.0
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 3.0e-12 75.5 112 46.4
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.1e-11 73.6 94 52.1
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.1e-11 73.6 104 43.3
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.5e-11 73.2 98 43.9
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.5e-11 73.2 97 49.5
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.5e-11 72.4 109 45.0
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 2.5e-11 72.4 95 44.2
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 3.3e-11 72.0 109 49.5
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 3.3e-11 72.0 107 45.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 4.3e-11 71.6 89 50.6
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 4.3e-11 71.6 102 48.0
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 4.3e-11 71.6 118 44.9
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.3e-11 71.6 85 48.2
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 5.6e-11 71.2 100 47.0
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.6e-11 71.2 109 44.0
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 5.6e-11 71.2 91 47.3
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 5.6e-11 71.2 91 47.3
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 7.4e-11 70.9 97 48.5
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 9.6e-11 70.5 107 43.0
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 9.6e-11 70.5 99 45.5
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 9.6e-11 70.5 103 48.5
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 9.6e-11 70.5 104 44.2
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.3e-10 70.1 87 47.1
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.3e-10 70.1 102 44.1
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.6e-10 69.7 108 39.8
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.6e-10 69.7 110 42.7
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-10 69.7 109 43.1
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.6e-10 69.7 77 53.2
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.6e-10 69.7 91 46.2
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.1e-10 69.3 99 42.4
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 2.1e-10 69.3 109 45.0
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.1e-10 69.3 86 46.5
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 2.8e-10 68.9 109 43.1
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 2.8e-10 68.9 98 46.9
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.8e-10 68.9 111 41.4
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 3.6e-10 68.6 88 46.6
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.6e-10 68.6 111 43.2
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 4.8e-10 68.2 111 42.3
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.8e-10 68.2 89 48.3
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 6.2e-10 67.8 109 43.1
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 6.2e-10 67.8 104 44.2
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 8.1e-10 67.4 85 48.2
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 8.1e-10 67.4 90 46.7
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.1e-10 67.4 87 44.8
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.1e-10 67.4 95 47.4
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.1e-10 67.4 128 41.4
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 8.1e-10 67.4 101 50.5
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.1e-09 67.0 104 42.3
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-09 66.6 107 43.9
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.4e-09 66.6 100 40.0
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.4e-09 66.6 107 43.0
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.8e-09 66.2 98 49.0
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 2.4e-09 65.9 97 44.3
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.4e-09 65.9 86 45.3
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 3.1e-09 65.5 128 41.4
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 3.1e-09 65.5 111 40.5
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.0e-09 65.1 100 40.0
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 4.0e-09 65.1 100 40.0
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 4.0e-09 65.1 105 44.8
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.3e-09 64.7 117 38.5
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 5.3e-09 64.7 91 46.2
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 5.3e-09 64.7 100 40.0
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 5.3e-09 64.7 96 45.8
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.3e-09 64.7 104 43.3
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.9e-09 64.3 100 39.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.9e-09 64.3 112 42.0
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.9e-09 64.3 112 42.0
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.9e-09 64.3 111 40.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 9.0e-09 63.9 107 43.9
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 9.0e-09 63.9 92 44.6
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.2e-08 63.5 103 43.7
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.2e-08 63.5 91 44.0
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.2e-08 63.5 91 44.0
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-08 63.5 84 50.0
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.5e-08 63.2 122 42.6
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.5e-08 63.2 100 40.0
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.5e-08 63.2 101 46.5
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.5e-08 63.2 95 43.2
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.0e-08 62.8 100 38.0
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 2.0e-08 62.8 93 44.1
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 3.4e-08 62.0 109 39.4
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 3.4e-08 62.0 100 39.0
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 3.4e-08 62.0 100 39.0
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.4e-08 62.0 100 40.0
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.4e-08 62.0 100 39.0
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 3.4e-08 62.0 90 42.2
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 4.5e-08 61.6 102 46.1
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.5e-08 61.6 92 41.3
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 4.5e-08 61.6 112 42.9
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.8e-08 61.2 94 42.6
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.8e-08 61.2 128 41.4
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.8e-08 61.2 118 41.5
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 5.8e-08 61.2 107 38.3
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.8e-08 61.2 90 46.7
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 5.8e-08 61.2 104 39.4
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 7.6e-08 60.8 90 43.3
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 7.6e-08 60.8 90 43.3
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 9.9e-08 60.5 88 40.9
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 9.9e-08 60.5 88 40.9
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 9.9e-08 60.5 115 39.1
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 9.9e-08 60.5 104 42.3
HPP92_022626 Vanilla planifolia HOM05D027912 ORTHO05D004461 9.9e-08 60.5 101 43.6
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.3e-07 60.1 94 43.6
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.3e-07 60.1 102 40.2
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.7e-07 59.7 92 41.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.7e-07 59.7 98 41.8
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 2.2e-07 59.3 121 40.5
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 2.2e-07 59.3 112 42.0
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.2e-07 59.3 89 41.6
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.2e-07 59.3 104 39.4
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 3.8e-07 58.5 114 40.4
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.8e-07 58.5 91 41.8
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 4.9e-07 58.2 85 43.5
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 6.4e-07 57.8 102 40.2
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.4e-07 57.8 128 40.6
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 8.4e-07 57.4 85 43.5
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 8.4e-07 57.4 89 42.7
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.4e-07 57.4 91 40.7
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-06 57.0 79 45.6
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-06 57.0 88 42.0
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.9e-06 56.2 122 38.5
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.9e-06 56.2 101 41.6
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 3.2e-06 55.5 101 39.6
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.2e-06 55.5 108 38.9
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.5e-06 54.7 105 39.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 5.5e-06 54.7 113 37.2
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 7.1e-06 54.3 94 39.4
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 9.3e-06 53.9 100 40.0
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.3e-06 53.9 86 41.9


User provided reference genes

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