Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 2644.4 1368 100.0
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 2451.8 1368 93.7
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1588.2 1388 61.7
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1586.2 1386 61.7
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1567.0 1385 60.6
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1507.3 1430 57.1
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1498.4 1386 57.8
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1488.8 1373 58.8
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1486.5 1385 57.5
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1482.6 1370 58.2
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1482.6 1386 57.8
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1480.7 1385 57.3
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1480.3 1383 57.5
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1474.9 1394 56.8
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1470.7 1394 57.0
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1469.9 1388 57.0
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1465.3 1387 56.3
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1464.1 1372 57.9
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1457.2 1372 57.9
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1448.7 1340 58.2
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1439.5 1342 58.0
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1433.7 1412 55.7
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1429.1 1398 56.2
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1424.1 1390 56.7
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1424.1 1388 56.8
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1415.6 1381 55.0
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1412.1 1379 55.1
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1397.1 1380 56.9
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1372.5 1439 53.0
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1371.7 1378 54.1
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1370.1 1386 54.3
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1367.4 1362 55.1
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1367.4 1388 53.4
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1367.1 1388 53.4
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1365.9 1398 54.2
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1362.1 1412 52.6
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1359.7 1378 53.9
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1357.0 1381 53.7
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1346.6 1330 56.1
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1345.1 1398 52.4
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1344.7 1379 54.3
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1343.9 1377 53.7
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1342.4 1427 52.3
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1339.3 1474 50.9
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1337.8 1410 52.8
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1335.5 1227 57.9
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1334.7 1381 53.1
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1332.8 1368 53.2
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1331.6 1381 54.2
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1330.9 1380 52.6
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1330.5 1374 52.8
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1328.2 1379 51.7
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1323.5 1375 52.6
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1323.1 1377 53.3
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1322.8 1380 53.3
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1322.0 1366 53.8
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1321.6 1412 51.6
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1317.8 1388 52.8
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1312.0 1371 51.8
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1311.6 1402 51.9
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1309.3 1364 52.5
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1309.3 1385 53.8
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1308.1 1363 52.6
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1303.1 1379 52.6
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1297.7 1379 52.8
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1297.0 1378 52.4
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1296.6 1379 52.8
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1291.6 1381 52.7
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1290.4 1381 51.5
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1278.5 1382 51.9
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1278.1 1379 52.2
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1238.4 1556 47.8
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1229.5 1132 59.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1226.5 1379 50.5
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1196.0 1377 49.2
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1181.0 1380 48.0
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1173.3 1367 49.2
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1165.2 1615 45.3
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 0.0e+00 1093.2 1169 52.4
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1084.7 1138 52.5
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 4.8e-298 1028.5 1052 52.9
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.1e-289 1000.7 998 55.3
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 4.8e-282 975.3 1011 53.8
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.2e-278 962.6 1026 51.3
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 5.3e-273 945.3 843 61.6
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 3.3e-251 872.8 845 54.9
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 3.1e-249 866.3 1368 39.7
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 2.1e-237 827.0 757 57.3
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.1e-225 788.1 726 57.2
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.0e-223 781.6 827 51.4
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 2.9e-223 780.0 1371 39.3
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 2.6e-187 660.6 1442 32.7
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 3.4e-171 607.1 1457 32.3
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 4.8e-157 560.1 519 57.2
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 2.4e-156 557.8 596 53.9
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.5e-155 555.1 453 66.2
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.0e-147 528.1 667 44.7
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 8.2e-141 506.1 1017 33.8
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 5.3e-140 503.4 455 59.8
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 6.5e-138 496.5 536 52.8
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.4e-132 478.8 533 51.6
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.2e-120 439.1 330 66.4
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 2.1e-120 438.3 410 57.8
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.0e-106 392.9 471 44.4
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-91 342.8 472 43.6
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 5.8e-86 323.9 273 61.2
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.5e-81 309.3 849 31.1
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 5.6e-81 307.4 353 50.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 9.6e-81 306.6 577 37.3
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.8e-72 277.7 447 39.6
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.9e-69 268.5 397 39.8
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.9e-61 241.9 355 44.2
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.9e-60 239.2 159 69.8
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.5e-57 229.6 246 49.2
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 3.7e-56 224.9 235 54.9
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.2e-54 219.9 138 73.2
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 3.2e-52 211.8 238 51.7
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 4.6e-51 208.0 258 44.6
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.3e-50 206.5 402 39.6
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 3.3e-49 201.8 174 59.2
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 3.7e-48 198.4 209 60.8
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.4e-47 196.4 1357 23.3
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 2.4e-47 195.7 218 49.1
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.2e-45 189.1 176 58.5
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 2.9e-45 188.7 137 69.3
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 3.9e-42 178.3 169 55.6
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 3.7e-40 171.8 138 65.2
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.1e-39 170.2 679 25.0
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 6.1e-35 154.5 161 54.7
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 3.9e-34 151.8 1237 23.0
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 2.5e-28 132.5 133 52.6
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 7.2e-28 131.0 136 51.5
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 9.4e-28 130.6 473 28.5
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.2e-27 130.2 96 68.8
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.3e-23 114.8 77 66.2
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.7e-22 110.9 155 44.5
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 3.2e-20 105.5 167 41.9
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 7.2e-20 104.4 95 53.7
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.0e-18 100.5 98 56.1
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.8e-18 99.8 280 33.6
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 2.3e-18 99.4 100 49.0
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 3.0e-18 99.0 152 42.1
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.2e-18 98.2 117 41.0
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 6.7e-18 97.8 91 54.9
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 7.5e-17 94.4 95 49.5
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 1.7e-16 93.2 501 26.3
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.1e-15 90.5 64 71.9
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 7.0e-15 87.8 99 48.5
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 9.1e-15 87.4 61 67.2
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-14 86.3 106 50.0
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 2.7e-14 85.9 101 47.5
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.1e-11 74.7 136 39.0
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.4e-10 73.6 89 48.3
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.3e-10 72.8 210 31.4
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 2.3e-10 72.8 51 64.7
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 6.8e-10 71.2 58 58.6
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 5.7e-09 68.2 210 31.4
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 9.8e-09 67.4 166 34.3
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.7e-08 66.6 166 34.3
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 1.1e-07 63.9 95 41.1
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 2.4e-07 62.8 92 39.1
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 4.1e-07 62.0 60 55.0
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.0e-07 61.2 130 33.8
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.5e-06 58.5 147 32.0
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 5.9e-06 58.2 62 54.8


User provided reference genes

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