Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 9.3e-178 626.7 305 100.0
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 3.5e-177 624.8 305 99.7
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.9e-146 522.7 298 79.9
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 4.4e-143 511.5 304 78.6
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 4.4e-143 511.5 294 79.6
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 1.7e-142 509.6 303 77.6
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.4e-141 506.5 303 76.6
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 9.1e-141 503.8 301 77.4
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 9.1e-141 503.8 302 75.5
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 9.1e-141 503.8 299 76.9
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.6e-140 503.1 306 77.5
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 3.5e-140 501.9 299 75.9
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 2.2e-139 499.2 301 76.4
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 2.9e-139 498.8 303 75.9
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 2.9e-139 498.8 295 77.6
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.9e-139 498.8 299 76.3
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 5.0e-139 498.0 302 76.5
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 6.5e-139 497.7 305 74.8
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 8.5e-139 497.3 303 75.2
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 1.1e-138 496.9 299 76.3
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.5e-138 496.5 301 75.7
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 1.9e-138 496.1 299 75.9
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.5e-138 495.7 303 75.2
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 3.2e-138 495.4 306 74.8
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 3.2e-138 495.4 295 77.3
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.2e-138 495.4 303 76.6
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 7.2e-138 494.2 299 75.6
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 9.4e-138 493.8 301 75.4
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.6e-137 493.0 306 74.5
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.6e-137 493.0 303 76.2
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 6.1e-137 491.1 296 77.7
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 6.1e-137 491.1 303 74.3
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 6.1e-137 491.1 303 74.9
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 8.0e-137 490.7 303 74.9
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.0e-136 490.3 299 74.9
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 4.0e-136 488.4 303 73.6
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 6.7e-136 487.6 303 73.6
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 6.7e-136 487.6 303 76.9
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.5e-135 486.5 299 73.9
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.6e-135 485.7 299 73.9
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 4.4e-135 485.0 303 74.9
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 5.7e-135 484.6 306 74.5
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 5.7e-135 484.6 303 75.6
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 5.7e-135 484.6 304 74.0
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 7.5e-135 484.2 302 73.2
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 9.7e-135 483.8 305 75.1
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 9.7e-135 483.8 304 72.4
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.7e-134 483.0 299 73.9
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.2e-134 482.6 299 73.2
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.8e-134 482.3 299 73.6
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 3.7e-134 481.9 309 72.2
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 4.8e-134 481.5 304 73.0
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.1e-133 480.3 303 73.6
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 1.8e-133 479.6 308 72.4
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 1.8e-133 479.6 300 74.0
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 4.1e-133 478.4 299 73.6
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 7.0e-133 477.6 304 71.7
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 1.2e-132 476.9 299 72.9
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.6e-132 476.5 308 72.1
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 2.7e-132 475.7 304 74.3
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 3.5e-132 475.3 295 74.2
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 3.5e-132 475.3 306 72.2
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 5.9e-132 474.6 295 73.6
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 1.0e-131 473.8 304 73.0
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 8.5e-131 470.7 303 72.3
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 1.5e-130 469.9 303 71.9
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 2.5e-130 469.2 301 70.4
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 3.2e-130 468.8 304 73.7
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 3.2e-130 468.8 305 71.8
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 5.5e-130 468.0 300 71.3
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 9.4e-130 467.2 305 71.5
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 4.7e-129 464.9 302 70.9
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.4e-128 463.4 303 73.3
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.8e-128 463.0 300 71.0
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 4.0e-128 461.8 303 72.9
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 5.2e-128 461.5 306 68.6
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 2.0e-127 459.5 372 61.3
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 4.4e-127 458.4 305 70.5
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 3.7e-126 455.3 306 67.0
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 3.7e-126 455.3 306 66.7
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 3.7e-126 455.3 380 59.2
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 6.3e-126 454.5 340 65.9
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.1e-125 453.8 313 71.2
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.8e-125 453.0 306 67.0
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 7.0e-125 451.1 306 67.0
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.6e-124 449.9 305 71.1
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 1.6e-124 449.9 306 67.0
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 5.9e-124 448.0 301 67.1
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.3e-123 446.8 301 66.8
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 2.9e-123 445.7 311 65.9
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.9e-123 445.7 324 65.4
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 5.0e-123 444.9 306 66.3
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 6.5e-123 444.5 306 66.3
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 1.1e-122 443.7 306 66.3
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.1e-122 443.7 301 67.1
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 2.5e-122 442.6 301 66.1
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 4.2e-122 441.8 307 65.1
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 1.6e-121 439.9 302 65.9
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.4e-120 436.8 314 64.3
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 8.3e-118 427.6 304 65.8
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 7.7e-116 421.0 271 72.3
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 7.7e-116 421.0 304 65.1
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 3.8e-115 418.7 303 66.0
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 2.5e-114 416.0 258 73.6
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 1.5e-111 406.8 304 65.1
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.6e-108 396.7 258 70.5
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 2.4e-101 372.9 260 66.2
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 2.3e-99 366.3 301 55.8
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 5.6e-98 361.7 235 70.6
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 4.1e-93 345.5 213 74.2
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 3.0e-91 339.3 301 54.5
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 8.6e-91 337.8 198 80.3
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 7.3e-90 334.7 302 53.6
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 7.3e-90 334.7 291 55.3
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 5.2e-88 328.6 264 61.4
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 1.0e-83 314.3 301 52.2
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 9.6e-82 307.8 174 80.5
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 3.1e-80 302.8 210 63.8
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 1.5e-79 300.4 174 77.6
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 9.3e-69 264.6 237 53.6
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 1.6e-68 263.8 176 72.2
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 2.1e-68 263.5 186 71.0
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.6e-63 246.5 143 79.7
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 3.5e-52 209.5 187 52.9
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 2.5e-50 203.4 170 53.5
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.3e-50 203.0 130 74.6
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 9.3e-45 184.9 104 80.8
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.1e-44 183.7 125 67.2
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 1.3e-43 181.0 130 63.8
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 7.4e-42 175.3 139 59.7
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.4e-40 171.0 145 61.4
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.1e-36 157.1 101 69.3
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 2.4e-32 143.7 106 63.2
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.0e-31 140.6 103 60.2
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.4e-31 139.8 103 62.1
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.0e-19 100.1 52 82.7
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 6.7e-19 99.0 76 55.3


User provided reference genes

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