Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 6.6e-263 910.2 477 100.0
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 4.7e-253 877.5 501 93.0
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.7e-208 728.8 471 81.3
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 8.2e-205 717.2 478 79.5
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 5.0e-202 708.0 468 79.5
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 7.2e-201 704.1 473 78.0
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.6e-200 701.8 478 77.4
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 6.1e-200 701.0 463 79.5
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 2.0e-198 696.0 453 78.8
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 4.3e-198 694.9 456 78.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.2e-197 692.6 475 76.2
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 3.7e-197 691.8 453 80.1
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.8e-196 689.5 468 77.1
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 9.1e-196 687.2 452 78.3
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 2.0e-195 686.0 478 76.4
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 2.6e-195 685.6 456 79.8
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 5.9e-195 684.5 477 75.3
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.3e-194 683.3 478 75.3
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.3e-194 683.3 472 76.9
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 2.9e-194 682.2 465 77.8
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 6.5e-194 681.0 458 77.7
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 8.5e-194 680.6 477 75.1
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.9e-193 679.5 446 78.0
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.9e-193 679.5 476 76.7
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.5e-193 679.1 468 76.1
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 3.2e-193 678.7 445 79.3
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 3.2e-193 678.7 478 75.5
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 5.5e-193 677.9 475 75.6
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 7.2e-193 677.6 465 77.4
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 9.4e-193 677.2 466 75.8
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 3.6e-192 675.2 461 76.6
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.7e-192 674.9 470 75.1
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 4.7e-192 674.9 435 80.0
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.4e-191 673.3 454 76.4
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.4e-191 673.3 479 73.9
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 1.4e-191 673.3 458 76.2
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 3.0e-191 672.2 448 78.3
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 8.8e-191 670.6 459 77.6
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 8.8e-191 670.6 445 78.9
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.5e-190 669.8 480 73.5
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 2.6e-190 669.1 448 77.7
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 3.3e-190 668.7 461 75.5
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 4.4e-190 668.3 445 77.8
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 4.4e-190 668.3 425 79.8
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 5.7e-190 667.9 428 78.7
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 5.7e-190 667.9 445 78.4
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 5.7e-190 667.9 502 72.1
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 7.4e-190 667.5 445 77.8
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.7e-189 666.4 445 78.7
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 2.8e-189 665.6 477 72.3
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 3.7e-189 665.2 468 73.9
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.2e-187 660.2 446 76.9
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 1.6e-187 659.8 454 76.9
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 2.6e-187 659.1 477 73.6
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 7.7e-187 657.5 468 74.1
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 1.0e-186 657.1 468 73.9
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 1.3e-186 656.8 477 73.0
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.7e-186 656.4 477 73.0
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.7e-186 656.4 477 73.4
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 2.2e-186 656.0 477 73.4
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.2e-186 656.0 461 74.8
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 3.8e-186 655.2 468 73.1
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.8e-186 655.2 479 72.9
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 8.5e-186 654.1 461 73.5
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 8.5e-186 654.1 479 72.9
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 1.1e-185 653.7 471 73.5
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.1e-185 653.7 455 75.6
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 1.5e-185 653.3 468 72.9
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 4.2e-185 651.7 461 74.0
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 4.2e-185 651.7 479 72.2
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 5.5e-185 651.4 477 72.5
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 7.2e-185 651.0 477 72.7
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 2.1e-184 649.4 461 72.5
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 6.1e-184 647.9 461 73.3
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.8e-183 646.4 477 72.1
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 2.3e-183 646.0 477 71.9
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 5.2e-183 644.8 477 71.7
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.1e-182 643.7 477 70.9
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.1e-182 643.7 477 71.5
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 3.3e-182 642.1 476 72.9
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 4.4e-182 641.7 477 71.3
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 7.5e-182 641.0 477 71.7
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 9.7e-182 640.6 477 72.5
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 9.7e-182 640.6 409 81.7
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.3e-181 640.2 474 71.7
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 3.7e-181 638.6 477 71.3
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 1.2e-179 633.6 487 69.4
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.6e-179 633.3 520 66.7
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 4.2e-177 625.2 483 70.8
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.4e-175 620.2 455 71.4
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 2.0e-174 616.3 432 74.1
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.0e-174 616.3 399 79.9
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 1.3e-173 613.6 406 77.8
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.4e-172 609.4 425 76.0
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 7.0e-172 607.8 507 65.7
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 3.8e-170 602.1 431 72.9
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.2e-168 597.0 420 76.0
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 1.4e-167 593.6 427 74.0
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 4.0e-167 592.0 425 72.7
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 2.9e-162 575.9 409 74.6
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 8.6e-162 574.3 393 77.9
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.9e-161 573.2 423 71.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.2e-160 570.5 422 73.0
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 6.4e-157 558.1 386 73.1
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.6e-155 553.5 424 67.9
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 9.2e-140 501.1 485 61.6
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 8.6e-138 494.6 352 77.6
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.4e-135 487.3 424 60.6
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 9.2e-132 474.6 360 69.2
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.8e-127 460.3 432 60.6
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 7.6e-126 454.9 329 70.5
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.1e-124 451.1 437 57.7
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 3.5e-123 446.0 434 58.3
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.0e-118 430.3 303 76.6
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 2.3e-106 390.2 388 58.0
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.1e-105 387.9 239 83.7
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 4.6e-83 312.8 238 72.3
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 4.8e-80 302.8 195 78.5
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.1e-79 301.6 202 77.2
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.1e-79 301.6 237 71.3
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 8.8e-74 282.0 204 71.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 3.0e-66 256.9 218 62.4
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.1e-63 246.9 182 74.7
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 1.2e-62 245.0 147 81.6
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.9e-53 213.8 461 36.0
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.0e-50 205.3 124 80.6
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 6.6e-37 159.5 137 65.0
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 6.6e-37 159.5 137 65.0
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 6.2e-35 152.9 133 60.9
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 7.5e-33 146.0 102 72.5
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 7.8e-30 136.0 263 38.8
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.7e-29 134.8 156 55.8
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.6e-28 129.8 124 58.9
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 4.7e-27 126.7 263 36.9
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 4.7e-27 126.7 101 66.3
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 6.4e-24 116.3 102 61.8
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.6e-19 101.7 87 59.8
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 1.8e-18 98.2 120 53.3
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.2e-15 87.4 67 65.7
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.2e-15 87.4 67 65.7
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-14 85.5 71 66.2
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.3e-13 81.3 136 44.9
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 3.0e-13 80.9 64 67.2
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 3.0e-13 80.9 91 54.9
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 8.7e-13 79.3 81 56.8
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 8.7e-13 79.3 64 65.6
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 8.7e-13 79.3 64 65.6
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 8.7e-13 79.3 64 65.6
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 8.7e-13 79.3 64 65.6
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 8.7e-13 79.3 64 65.6
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 8.7e-13 79.3 64 65.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 8.7e-13 79.3 64 65.6
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-12 79.0 63 66.7
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 1.1e-12 79.0 64 65.6
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 1.5e-12 78.6 61 57.4
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.5e-12 78.6 46 82.6
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 2.5e-12 77.8 46 76.1
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 2.5e-12 77.8 46 76.1
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 4.0e-10 70.5 66 60.6
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 4.4e-09 67.0 99 44.4
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 4.4e-09 67.0 165 32.7
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 9.9e-09 65.9 67 58.2
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 6.4e-08 63.2 81 44.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 3.2e-07 60.8 177 29.4
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 4.2e-07 60.5 47 68.1
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 5.4e-07 60.1 42 73.8
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 7.1e-07 59.7 39 74.4
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 7.1e-07 59.7 48 66.7
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 2.7e-06 57.8 46 65.2
BcaB08g35223 Brassica carinata HOM05D004269 ORTHO05D016737 6.0e-06 56.6 38 73.7
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 7.8e-06 56.2 58 55.2


User provided reference genes

Program Settings