Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 5.9e-61 237.3 113 100.0
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 8.3e-31 137.1 101 75.2
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 8.3e-31 137.1 101 75.2
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 1.1e-30 136.7 102 74.5
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 4.3e-27 124.8 82 78.0
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 2.1e-26 122.5 86 74.4
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 8.0e-26 120.6 84 73.8
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 1.4e-25 119.8 72 81.9
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 1.4e-25 119.8 72 81.9
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 1.8e-25 119.4 72 81.9
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 1.8e-25 119.4 84 73.8
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.8e-25 119.4 70 84.3
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.8e-25 119.4 72 80.6
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.8e-25 119.4 72 80.6
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 1.8e-25 119.4 72 81.9
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 3.0e-25 118.6 72 80.6
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.0e-25 118.6 82 74.4
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 4.0e-25 118.2 72 77.8
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 5.2e-25 117.9 102 63.7
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 6.8e-25 117.5 72 79.2
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 8.9e-25 117.1 81 72.8
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 8.9e-25 117.1 72 77.8
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.2e-24 116.7 98 63.3
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 1.2e-24 116.7 82 70.7
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 1.5e-24 116.3 72 80.6
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 2.0e-24 115.9 82 70.7
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 2.6e-24 115.5 82 69.5
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 3.4e-24 115.2 108 59.3
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 4.4e-24 114.8 82 69.5
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 4.4e-24 114.8 72 79.2
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 7.5e-24 114.0 72 77.8
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 7.5e-24 114.0 82 69.5
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 7.5e-24 114.0 72 76.4
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 9.8e-24 113.6 72 77.8
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 9.8e-24 113.6 82 72.0
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 9.8e-24 113.6 72 75.0
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 1.7e-23 112.8 82 68.3
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 2.2e-23 112.5 81 70.4
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 2.2e-23 112.5 81 70.4
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 2.2e-23 112.5 72 76.4
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 2.2e-23 112.5 72 75.0
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 2.9e-23 112.1 72 75.0
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.4e-23 110.9 72 75.0
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.4e-23 110.9 72 75.0
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 6.4e-23 110.9 72 75.0
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 8.3e-23 110.5 82 67.1
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 8.3e-23 110.5 71 74.6
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 1.4e-22 109.8 85 67.1
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.4e-22 109.8 72 72.2
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 1.8e-22 109.4 72 73.6
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 2.4e-22 109.0 86 68.6
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 3.2e-22 108.6 72 72.2
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 3.2e-22 108.6 72 75.0
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 4.1e-22 108.2 72 72.2
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 5.4e-22 107.8 76 72.4
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.4e-22 107.8 72 73.6
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 5.4e-22 107.8 72 73.6
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 5.4e-22 107.8 71 73.2
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 5.4e-22 107.8 72 73.6
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 9.2e-22 107.1 71 70.4
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 1.6e-21 106.3 72 70.8
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 2.0e-21 105.9 73 72.6
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 2.0e-21 105.9 69 75.4
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 4.6e-21 104.8 93 61.3
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 7.8e-21 104.0 69 71.0
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 1.0e-20 103.6 72 69.4
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 1.3e-20 103.2 72 69.4
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 2.3e-20 102.4 69 72.5
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 3.0e-20 102.1 79 62.0
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 3.0e-20 102.1 59 76.3
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 3.9e-20 101.7 72 69.4
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.5e-19 99.8 72 70.8
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 1.9e-19 99.4 82 61.0
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 1.9e-19 99.4 82 61.0
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 9.5e-19 97.1 86 58.1
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.6e-18 96.3 123 45.5
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 1.6e-18 96.3 106 49.1
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.8e-18 95.5 119 47.1
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 3.6e-18 95.1 82 61.0
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 3.6e-18 95.1 82 61.0
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 3.6e-18 95.1 82 61.0
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.6e-18 95.1 71 67.6
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 6.2e-18 94.4 86 57.0
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 1.1e-17 93.6 73 64.4
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 1.1e-17 93.6 72 62.5
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.4e-17 93.2 82 57.3
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 4.0e-17 91.7 130 42.3
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 5.2e-17 91.3 77 63.6
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 8.9e-17 90.5 69 68.1
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 4.4e-16 88.2 85 58.8
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 1.4e-14 83.2 79 54.4
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 3.2e-14 82.0 113 42.5
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.6e-13 79.7 70 55.7
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.5e-11 73.2 72 59.7
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.6e-10 69.7 38 86.8
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.8e-09 66.2 38 84.2
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 1.3e-07 60.1 70 47.1
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 1.7e-07 59.7 38 76.3
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 4.9e-07 58.2 41 65.9
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 1.1e-06 57.0 29 82.8
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.4e-06 56.6 29 79.3
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.9e-06 56.2 29 82.8
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 2.4e-06 55.8 69 44.9
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 4.1e-06 55.1 68 47.1
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 5.4e-06 54.7 29 79.3
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 7.1e-06 54.3 29 79.3


User provided reference genes

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