Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.7e-151 539.3 258 100.0
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 2.3e-105 386.0 246 73.2
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.5e-104 383.3 246 72.8
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 2.4e-102 375.9 251 68.1
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 5.4e-102 374.8 237 72.2
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 1.6e-101 373.2 249 73.1
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 2.0e-101 372.9 247 70.0
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.3e-100 370.2 237 72.6
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 2.3e-100 369.4 211 79.1
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 5.0e-100 368.2 237 70.9
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 8.6e-100 367.5 212 78.8
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 5.6e-99 364.8 214 77.6
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 9.5e-99 364.0 244 69.3
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 9.5e-99 364.0 244 69.3
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.6e-98 363.2 219 75.3
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 2.8e-98 362.5 214 77.1
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 4.7e-98 361.7 217 76.0
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 1.4e-97 360.1 239 70.3
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.8e-97 359.8 254 68.1
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 4.0e-97 358.6 239 71.1
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 6.8e-97 357.8 247 68.0
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 6.8e-97 357.8 210 76.2
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 6.8e-97 357.8 217 75.6
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 6.8e-97 357.8 211 78.7
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 8.9e-97 357.5 234 70.9
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 1.2e-96 357.1 240 70.8
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.5e-96 356.7 234 71.4
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 1.5e-96 356.7 234 70.9
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 2.0e-96 356.3 237 69.2
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 4.4e-96 355.1 240 68.3
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 9.8e-96 354.0 218 74.8
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 1.3e-95 353.6 241 70.1
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 1.7e-95 353.2 215 76.3
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.2e-95 352.8 247 67.2
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 3.7e-95 352.1 246 65.9
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.7e-95 352.1 243 67.9
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 3.7e-95 352.1 211 75.4
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 6.4e-95 351.3 219 73.1
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 6.4e-95 351.3 218 73.9
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 1.1e-94 350.5 238 67.6
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.9e-94 349.7 252 66.7
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 1.9e-94 349.7 211 75.4
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.9e-94 349.7 213 74.2
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 2.4e-94 349.4 211 77.3
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 7.1e-94 347.8 237 69.2
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 7.1e-94 347.8 213 76.1
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 9.2e-94 347.4 238 66.8
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.1e-93 346.3 255 65.1
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.7e-93 345.9 259 64.9
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 4.6e-93 345.1 209 75.1
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.7e-92 343.2 248 64.5
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.3e-92 342.8 248 64.9
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.3e-92 342.8 243 66.3
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 3.0e-92 342.4 211 72.5
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 3.0e-92 342.4 224 71.0
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 3.0e-92 342.4 216 71.8
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.9e-92 342.0 214 73.8
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 5.1e-92 341.7 210 71.9
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 5.1e-92 341.7 214 70.6
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 6.6e-92 341.3 212 74.1
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 6.6e-92 341.3 214 73.4
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 6.6e-92 341.3 245 64.9
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.1e-91 340.5 216 73.1
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 2.5e-91 339.3 227 68.3
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 2.5e-91 339.3 212 74.1
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 2.5e-91 339.3 216 71.3
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 3.3e-91 339.0 240 64.6
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 3.3e-91 339.0 233 66.5
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 4.3e-91 338.6 253 62.8
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 4.3e-91 338.6 248 62.9
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 4.3e-91 338.6 214 70.1
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 7.3e-91 337.8 242 64.5
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 7.3e-91 337.8 212 73.6
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 9.5e-91 337.4 215 67.9
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 1.6e-90 336.7 213 73.7
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 1.6e-90 336.7 188 79.8
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 1.6e-90 336.7 232 64.2
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 2.1e-90 336.3 214 72.9
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 4.7e-90 335.1 198 76.3
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 6.2e-90 334.7 224 70.1
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.4e-89 333.6 253 61.7
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 1.2e-88 330.5 236 64.4
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.5e-88 330.1 240 64.6
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 2.0e-88 329.7 240 67.1
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 4.4e-88 328.6 250 62.0
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 4.4e-88 328.6 214 67.8
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 4.4e-88 328.6 237 65.8
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 4.4e-88 328.6 253 62.5
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 7.6e-88 327.8 246 63.8
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 1.7e-87 326.6 214 67.3
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 1.7e-87 326.6 252 62.7
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 2.9e-87 325.9 214 67.3
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 2.9e-87 325.9 216 68.1
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 4.9e-87 325.1 212 71.7
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 8.4e-87 324.3 217 68.2
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 1.1e-86 323.9 263 59.7
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 4.1e-86 322.0 230 67.0
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 9.2e-86 320.9 239 62.8
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 3.5e-85 318.9 217 67.3
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 3.5e-85 318.9 217 67.3
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 4.6e-85 318.5 241 63.9
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.0e-85 318.2 309 52.8
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 1.0e-84 317.4 217 66.8
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.0e-84 317.4 222 67.1
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 3.9e-84 315.5 213 70.0
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.1e-83 313.9 214 66.4
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.3e-83 311.2 214 65.9
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 4.0e-81 305.4 392 44.6
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 7.8e-77 291.2 259 58.7
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.0e-76 290.8 209 65.6
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.6e-74 282.3 182 70.9
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 8.4e-71 271.2 182 67.0
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-70 270.4 221 59.3
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 1.2e-69 267.3 209 59.3
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.1e-67 260.8 213 60.6
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 1.9e-67 260.0 278 51.1
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 4.8e-66 255.4 243 56.0
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 6.2e-66 255.0 181 65.2
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.8e-65 253.4 220 56.8
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 1.3e-60 237.3 165 64.8
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.3e-59 232.6 214 54.2
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 7.4e-59 231.5 120 81.7
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 1.8e-57 226.9 164 65.2
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.6e-56 221.5 249 47.8
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.3e-55 220.7 167 59.9
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 1.9e-54 216.9 162 62.3
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 7.1e-54 214.9 125 72.0
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.4e-51 204.9 127 70.9
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.7e-50 202.6 121 72.7
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.5e-48 197.2 153 62.7
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.6e-45 187.2 135 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 2.2e-42 176.8 126 58.7
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 4.2e-38 162.5 146 49.3
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 3.1e-33 146.4 95 66.3
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 1.4e-28 131.0 83 72.3
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 9.1e-25 118.2 133 47.4
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 7.0e-17 92.0 109 49.5
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.6e-16 90.9 97 52.6
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 1.3e-10 71.2 71 54.9
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 1.7e-10 70.9 77 49.4
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.1e-09 65.1 32 84.4
Eucgr.H04277 Eucalyptus grandis HOM05D005134 ORTHO05D194288 1.3e-07 61.2 121 37.2


User provided reference genes

Program Settings