Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6881 Papaver somniferum HOM05D003187 ORTHO05D003630 2.2e-76 288.9 143 100.0
PSO339G2876 Papaver somniferum HOM05D003187 ORTHO05D003630 6.1e-55 217.6 170 68.2
PSO384G1733 Papaver somniferum HOM05D003187 ORTHO05D003630 1.8e-54 216.1 170 68.2
Lj8A73G45 Lonicera japonica HOM05D003187 ORTHO05D003630 5.2e-46 188.0 170 58.8
Medtr7g092860 Medicago truncatula HOM05D003187 ORTHO05D003630 5.2e-46 188.0 170 58.2
TPR.G8049 Trifolium pratense HOM05D003187 ORTHO05D003630 1.2e-45 186.8 170 58.2
MELO3C025148.2 Cucumis melo HOM05D003187 ORTHO05D003630 3.4e-45 185.3 170 56.5
Phvul.008G226900 Phaseolus vulgaris HOM05D003187 ORTHO05D003630 3.4e-45 185.3 170 57.1
VMungo0647G1330 Vigna mungo HOM05D003187 ORTHO05D003630 3.4e-45 185.3 170 58.2
CsaV3_5G008870 Cucumis sativus L. HOM05D003187 ORTHO05D003630 4.4e-45 184.9 170 55.9
arahy.Tifrunner.gnm1.ann1.GJ5BI6 Arachis hypogaea HOM05D003187 ORTHO05D003630 1.3e-44 183.3 170 57.6
arahy.Tifrunner.gnm1.ann1.P69V6G Arachis hypogaea HOM05D003187 ORTHO05D003630 1.3e-44 183.3 170 57.6
Dinv20950 Davidia involucrata HOM05D003187 ORTHO05D003630 1.3e-44 183.3 170 56.5
Dinv20993 Davidia involucrata HOM05D003187 ORTHO05D003630 1.3e-44 183.3 170 56.5
Gohir.A05G346100 Gossypium hirsutum HOM05D003187 ORTHO05D003630 1.3e-44 183.3 172 56.4
Gohir.D04G066500 Gossypium hirsutum HOM05D003187 ORTHO05D003630 1.3e-44 183.3 172 56.4
Gorai.012G075300 Gossypium raimondii HOM05D003187 ORTHO05D003630 1.3e-44 183.3 172 56.4
Thecc.10G027100 Theobroma cacao HOM05D003187 ORTHO05D003630 1.3e-44 183.3 172 56.4
Atru.chr12.251 Acer truncatum HOM05D003187 ORTHO05D003630 1.7e-44 183.0 170 56.5
Ciclev10031157m.g Citrus clementina HOM05D003187 ORTHO05D003630 1.7e-44 183.0 170 56.5
DCAR_011784 Daucus carota HOM05D003187 ORTHO05D003630 1.7e-44 183.0 170 57.6
Sed0019761 Sechium edule HOM05D003187 ORTHO05D003630 1.7e-44 183.0 170 57.1
PGSC0003DMG400027451 Solanum tuberosum HOM05D003187 ORTHO05D003630 1.7e-44 183.0 170 57.1
CSS0009728 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 2.2e-44 182.6 170 56.5
CSS0010540 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 2.2e-44 182.6 170 56.5
COL.COLO4_25670 Corchorus olitorius HOM05D003187 ORTHO05D003630 2.2e-44 182.6 172 57.0
Glyma.14G062500 Glycine max HOM05D003187 ORTHO05D003630 2.2e-44 182.6 170 56.5
Oeu027845.1 Olea europaea HOM05D003187 ORTHO05D003630 2.2e-44 182.6 170 56.5
ClCG07G003910 Citrullus lanatus HOM05D003187 ORTHO05D003630 3.7e-44 181.8 170 55.9
QL08p062568 Quercus lobata HOM05D003187 ORTHO05D003630 3.7e-44 181.8 170 55.9
Hund05583 Selenicereus undatus HOM05D003187 ORTHO05D003630 3.7e-44 181.8 170 55.9
arahy.Tifrunner.gnm1.ann1.0XII0R Arachis hypogaea HOM05D003187 ORTHO05D003630 4.8e-44 181.4 170 57.1
CAN.G584.39 Capsicum annuum HOM05D003187 ORTHO05D003630 4.8e-44 181.4 170 56.5
Duzib114G0739 Durio zibethinus HOM05D003187 ORTHO05D003630 4.8e-44 181.4 172 55.8
CANSAT80G1383 Cannabis sativa HOM05D003187 ORTHO05D003630 6.3e-44 181.0 167 56.9
Solyc07g006530.3 Solanum lycopersicum HOM05D003187 ORTHO05D003630 6.3e-44 181.0 170 56.5
Sopen07g002610 Solanum pennellii HOM05D003187 ORTHO05D003630 6.3e-44 181.0 170 56.5
vmacro14468 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 6.3e-44 181.0 167 57.5
arahy.Tifrunner.gnm1.ann1.K3QQ9E Arachis hypogaea HOM05D003187 ORTHO05D003630 8.3e-44 180.6 170 57.1
Actinidia00931 Actinidia chinensis HOM05D003187 ORTHO05D003630 1.1e-43 180.3 151 60.9
Dinv34429 Davidia involucrata HOM05D003187 ORTHO05D003630 1.4e-43 179.9 170 54.7
Psat6g127920 Pisum sativum HOM05D003187 ORTHO05D003630 1.4e-43 179.9 170 55.3
GSVIVG01016375001 Vitis vinifera HOM05D003187 ORTHO05D003630 1.4e-43 179.9 170 56.5
Peaxi162Scf00457g00110 Petunia axillaris HOM05D003187 ORTHO05D003630 1.8e-43 179.5 170 55.9
Lalb_Chr10g0104991 Lupinus albus HOM05D003187 ORTHO05D003630 2.4e-43 179.1 170 56.5
CiPaw.05G043000 Carya illinoinensis HOM05D003187 ORTHO05D003630 3.1e-43 178.7 170 55.3
Eucgr.G03026 Eucalyptus grandis HOM05D003187 ORTHO05D003630 3.1e-43 178.7 170 56.5
LjContig00357g0016423 Lotus japonicus HOM05D003187 ORTHO05D003630 3.1e-43 178.7 170 54.7
Manes.07G124700 Manihot esculenta HOM05D003187 ORTHO05D003630 3.1e-43 178.7 170 55.9
Glyma.02G254000 Glycine max HOM05D003187 ORTHO05D003630 4.1e-43 178.3 170 54.7
Nitab4.5_0009672g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 7.0e-43 177.6 170 55.3
Glyma.10G247850 Glycine max HOM05D003187 ORTHO05D003630 9.1e-43 177.2 170 55.9
SGA_v2.0_scaffold62G21340 Striga asiatica HOM05D003187 ORTHO05D003630 9.1e-43 177.2 173 54.9
Cpa.g.sc19.222 Carica papaya HOM05D003187 ORTHO05D003630 1.6e-42 176.4 170 55.3
TAR369G0547 Trochodendron aralioides HOM05D003187 ORTHO05D003630 1.6e-42 176.4 170 55.3
HanXRQChr14g0459901 Helianthus annuus HOM05D003187 ORTHO05D003630 2.0e-42 176.0 172 53.5
Nn2g12076 Nelumbo nucifera HOM05D003187 ORTHO05D003630 2.0e-42 176.0 168 54.8
Sabra10G0148900 Salix brachista HOM05D003187 ORTHO05D003630 2.0e-42 176.0 170 55.3
CiPaw.06G148700 Carya illinoinensis HOM05D003187 ORTHO05D003630 2.7e-42 175.6 170 54.7
AUR62001143 Chenopodium quinoa HOM05D003187 ORTHO05D003630 4.5e-42 174.9 170 54.7
AUR62016534 Chenopodium quinoa HOM05D003187 ORTHO05D003630 4.5e-42 174.9 172 54.7
Rhsim09G0171800 Rhododendron simsii HOM05D003187 ORTHO05D003630 4.5e-42 174.9 178 53.4
EL10Ac7g17924 Beta vulgaris HOM05D003187 ORTHO05D003630 7.7e-42 174.1 170 54.1
Peaxi162Scf00297g01023 Petunia axillaris HOM05D003187 ORTHO05D003630 7.7e-42 174.1 170 54.7
A08p13810 Brassica napus HOM05D003187 ORTHO05D003630 1.0e-41 173.7 167 55.7
BraA08t33360Z Brassica rapa HOM05D003187 ORTHO05D003630 1.0e-41 173.7 167 55.7
SalBow1G1358 Salvia bowleyana HOM05D003187 ORTHO05D003630 1.0e-41 173.7 167 55.7
Sc17g0002050 Simmondsia chinensis HOM05D003187 ORTHO05D003630 1.0e-41 173.7 170 55.3
unitig_27.g25097 Utricularia gibba HOM05D003187 ORTHO05D003630 1.0e-41 173.7 171 52.0
BcaNung02707 Brassica carinata HOM05D003187 ORTHO05D003630 1.3e-41 173.3 167 55.7
C07p49720 Brassica napus HOM05D003187 ORTHO05D003630 1.3e-41 173.3 167 55.7
BolC7t45473H Brassica oleracea HOM05D003187 ORTHO05D003630 1.3e-41 173.3 167 55.7
BraA03t14212Z Brassica rapa HOM05D003187 ORTHO05D003630 1.7e-41 172.9 167 55.1
Migut.F00885 Erythranthe guttata HOM05D003187 ORTHO05D003630 1.7e-41 172.9 170 53.5
BcaC09g51513 Brassica carinata HOM05D003187 ORTHO05D003630 2.3e-41 172.6 167 55.1
C01p12350 Brassica napus HOM05D003187 ORTHO05D003630 2.3e-41 172.6 167 55.1
BolC1t01210H Brassica oleracea HOM05D003187 ORTHO05D003630 2.3e-41 172.6 167 55.1
Cc05_g02550 Coffea canephora HOM05D003187 ORTHO05D003630 2.3e-41 172.6 170 53.5
Lsat_1_v5_gn_2_122660 Lactuca sativa HOM05D003187 ORTHO05D003630 2.3e-41 172.6 169 52.1
MD04G1043000 Malus domestica HOM05D003187 ORTHO05D003630 2.3e-41 172.6 170 53.5
ATR0026G045 Amborella trichopoda HOM05D003187 ORTHO05D003630 2.9e-41 172.2 176 51.1
FAN13G0040 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.9e-41 172.2 170 53.5
RcHm_v2.0_Chr7g0194071 Rosa chinensis HOM05D003187 ORTHO05D003630 2.9e-41 172.2 170 54.1
BcaC01g00541 Brassica carinata HOM05D003187 ORTHO05D003630 3.8e-41 171.8 167 54.5
BolC3t20388H Brassica oleracea HOM05D003187 ORTHO05D003630 3.8e-41 171.8 167 54.5
Potri.010G193400 Populus trichocarpa HOM05D003187 ORTHO05D003630 3.8e-41 171.8 168 54.2
A03p51310 Brassica napus HOM05D003187 ORTHO05D003630 5.0e-41 171.4 167 54.5
CDE04G1847 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 5.0e-41 171.4 170 51.8
CDE12G0549 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 5.0e-41 171.4 170 51.8
Cc06_g17320 Coffea canephora HOM05D003187 ORTHO05D003630 5.0e-41 171.4 170 53.5
Thhalv10025077m.g Eutrema salsugineum HOM05D003187 ORTHO05D003630 5.0e-41 171.4 167 55.1
FAN03G0133 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.0e-41 171.4 134 64.2
THA.LOC104806141 Tarenaya hassleriana HOM05D003187 ORTHO05D003630 5.0e-41 171.4 170 54.7
BcaC06g30583 Brassica carinata HOM05D003187 ORTHO05D003630 6.5e-41 171.0 167 55.1
Lsat_1_v5_gn_7_58981 Lactuca sativa HOM05D003187 ORTHO05D003630 6.5e-41 171.0 169 53.3
A01p10400 Brassica napus HOM05D003187 ORTHO05D003630 8.6e-41 170.6 167 54.5
C03p81220 Brassica napus HOM05D003187 ORTHO05D003630 8.6e-41 170.6 167 53.9
BraA01t00987Z Brassica rapa HOM05D003187 ORTHO05D003630 8.6e-41 170.6 167 54.5
HanXRQChr07g0202751 Helianthus annuus HOM05D003187 ORTHO05D003630 8.6e-41 170.6 169 53.3
ECA238G3690 Erigeron canadensis HOM05D003187 ORTHO05D003630 1.1e-40 170.2 169 52.7
FAN08G2825 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.1e-40 170.2 170 52.9
FAN18G0443 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.1e-40 170.2 170 52.9
FAN18G2229 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.1e-40 170.2 170 52.9
FAN04G2380 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.5e-40 169.9 170 52.9
MBI17_g24519_MAGBIO Magnolia biondii HOM05D003187 ORTHO05D003630 1.5e-40 169.9 172 53.5
Aa31LG6G1160 Aethionema arabicum HOM05D003187 ORTHO05D003630 1.9e-40 169.5 166 54.8
Aqoxy6G01396 Aquilegia oxysepala HOM05D003187 ORTHO05D003630 1.9e-40 169.5 175 50.3
AL3G37850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 3.3e-40 168.7 167 54.5
CARHR225270 Cardamine hirsuta HOM05D003187 ORTHO05D003630 3.3e-40 168.7 167 55.1
Prupe.7G059800 Prunus persica HOM05D003187 ORTHO05D003630 3.3e-40 168.7 172 51.2
Cc05_g02410 Coffea canephora HOM05D003187 ORTHO05D003630 4.2e-40 168.3 170 52.4
Sp7g15590 Schrenkiella parvula HOM05D003187 ORTHO05D003630 4.2e-40 168.3 167 53.9
Hund18445 Selenicereus undatus HOM05D003187 ORTHO05D003630 4.2e-40 168.3 170 52.4
TWI53G1626 Tripterygium wilfordii HOM05D003187 ORTHO05D003630 4.2e-40 168.3 168 52.4
HPP92_018291 Vanilla planifolia HOM05D003187 ORTHO05D003630 4.2e-40 168.3 170 54.1
Carub.0007s2280 Capsella rubella HOM05D003187 ORTHO05D003630 5.5e-40 167.9 167 53.9
Hma1.2p1_0710F.1_g207370 Hydrangea macrophylla HOM05D003187 ORTHO05D003630 5.5e-40 167.9 167 52.7
AT4G18440 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 9.5e-40 167.2 167 54.5
AL7G35850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 1.6e-39 166.4 167 55.1
PGR042G2760 Punica granatum HOM05D003187 ORTHO05D003630 2.1e-39 166.0 170 51.8
Prupe.1G197600 Prunus persica HOM05D003187 ORTHO05D003630 2.8e-39 165.6 170 51.2
AT1G36280 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 4.7e-39 164.9 167 53.3
Os03g0313600 Oryza sativa ssp. japonica HOM05D003187 ORTHO05D003630 4.7e-39 164.9 170 51.8
Haze_17177 Corylus avellana HOM05D003187 ORTHO05D003630 8.0e-39 164.1 205 46.3
Pp3c9_17690 Physcomitrium patens HOM05D003187 ORTHO05D003630 8.0e-39 164.1 166 51.8
CBR_g16842 Chara braunii HOM05D003187 ORTHO05D003630 5.2e-38 161.4 170 51.2
Zm00001eb015040 Zea mays HOM05D003187 ORTHO05D003630 6.8e-38 161.0 168 51.8
Manes.10G018200 Manihot esculenta HOM05D003187 ORTHO05D003630 1.5e-37 159.8 167 53.3
FAN10G0795 Fragaria x ananassa HOM05D003187 ORTHO05D003630 9.8e-37 157.1 170 51.8
FvH4_5g04980 Fragaria vesca HOM05D003187 ORTHO05D003630 2.8e-36 155.6 170 50.6
FAN06G4812 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.1e-35 153.7 155 52.9
SHI03522 Sapria himalayana HOM05D003187 ORTHO05D003630 1.1e-35 153.7 166 50.6
AagrBONN_evm.TU.Sc2ySwM_228.2882 Anthoceros agrestis HOM05D003187 ORTHO05D003630 2.4e-35 152.5 171 47.4
Mapoly0031s0040 Marchantia polymorpha HOM05D003187 ORTHO05D003630 5.4e-35 151.4 170 47.6
Ah.08g214730 Amaranthus hybridus HOM05D003187 ORTHO05D003630 9.2e-35 150.6 136 58.1
MCO12G170 Micromonas commoda HOM05D003187 ORTHO05D003630 2.9e-33 145.6 172 44.8
PRCOL_00002332 Prasinoderma coloniale HOM05D003187 ORTHO05D003630 8.6e-33 144.1 166 46.4
Medtr5g081750 Medicago truncatula HOM05D003187 ORTHO05D003630 1.1e-32 143.7 194 45.4
Ca_05654_v3 Cicer arietinum L. HOM05D003187 ORTHO05D003630 1.9e-32 142.9 106 64.2
Nitab4.5_0007356g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 4.3e-32 141.7 93 74.2
Actinidia13914 Actinidia chinensis HOM05D003187 ORTHO05D003630 1.2e-31 140.2 149 51.0
Nitab4.5_0008689g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 1.2e-31 140.2 144 52.8
FvH4_7g08523 Fragaria vesca HOM05D003187 ORTHO05D003630 1.6e-31 139.8 139 54.0
SMO356G0706 Selaginella moellendorffii HOM05D003187 ORTHO05D003630 2.8e-31 139.0 165 46.1
Cre13.g565450 Chlamydomonas reinhardtii HOM05D003187 ORTHO05D003630 4.7e-31 138.3 168 47.0
BcaB04g18477 Brassica carinata HOM05D003187 ORTHO05D003630 7.5e-29 131.0 153 47.7
Nitab4.5_0000244g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 7.5e-29 131.0 127 55.9
ECA232G0632 Erigeron canadensis HOM05D003187 ORTHO05D003630 3.5e-26 122.1 108 57.4
ATR0686G248 Amborella trichopoda HOM05D003187 ORTHO05D003630 5.0e-25 118.2 90 58.9
SEGI_41372 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 2.5e-24 115.9 88 56.8
CAN.G1271.9 Capsicum annuum HOM05D003187 ORTHO05D003630 5.6e-24 114.8 85 64.7
FAN10G2756 Fragaria x ananassa HOM05D003187 ORTHO05D003630 4.7e-23 111.7 100 55.0
FvH4_7g08522 Fragaria vesca HOM05D003187 ORTHO05D003630 3.7e-20 102.1 119 47.9
BcaC03g16804 Brassica carinata HOM05D003187 ORTHO05D003630 1.9e-19 99.8 120 48.3
RcHm_v2.0_Chr7g0186531 Rosa chinensis HOM05D003187 ORTHO05D003630 1.9e-19 99.8 108 47.2
CANSAT80G0456 Cannabis sativa HOM05D003187 ORTHO05D003630 7.8e-18 94.4 107 50.5
vmacro10066 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 1.3e-17 93.6 107 50.5
Actinidia25354 Actinidia chinensis HOM05D003187 ORTHO05D003630 2.3e-17 92.8 149 40.3
Nn2g11364 Nelumbo nucifera HOM05D003187 ORTHO05D003630 9.5e-16 87.4 107 46.7
C02p46750 Brassica napus HOM05D003187 ORTHO05D003630 1.8e-14 83.2 55 72.7
FvH4_5g11350 Fragaria vesca HOM05D003187 ORTHO05D003630 1.8e-14 83.2 110 40.9
FAN18G2583 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.8e-14 83.2 110 40.9
FAN18G3798 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.8e-14 83.2 110 40.9
Nitab4.5_0012646g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 2.3e-14 82.8 123 42.3
Psat5g091080 Pisum sativum HOM05D003187 ORTHO05D003630 4.0e-14 82.0 61 62.3
Psat6g139960 Pisum sativum HOM05D003187 ORTHO05D003630 4.0e-14 82.0 61 62.3
HanXRQChr11g0322721 Helianthus annuus HOM05D003187 ORTHO05D003630 8.9e-14 80.9 57 66.7
Cc00_g04440 Coffea canephora HOM05D003187 ORTHO05D003630 9.9e-13 77.4 104 48.1
SEGI_04750 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 9.9e-13 77.4 97 48.5
Cre13.g565321 Chlamydomonas reinhardtii HOM05D003187 ORTHO05D003630 8.3e-12 74.3 70 54.3
FAN08G1218 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.1e-11 73.9 110 38.2
HanXRQChr01g0017651 Helianthus annuus HOM05D003187 ORTHO05D003630 9.2e-11 70.9 104 42.3
Glyma.20G147852 Glycine max HOM05D003187 ORTHO05D003630 6.6e-09 64.7 46 67.4
Psat6g019240 Pisum sativum HOM05D004506 ORTHO05D000469 2.8e-07 59.3 52 55.8
RcHm_v2.0_Chr5g0043781 Rosa chinensis HOM05D003187 ORTHO05D003630 2.8e-07 59.3 49 65.3
BolC2t10727H Brassica oleracea HOM05D003187 ORTHO05D003630 4.7e-07 58.5 81 45.7
RcHm_v2.0_Chr5g0043801 Rosa chinensis HOM05D003187 ORTHO05D003630 1.4e-06 57.0 100 40.0


User provided reference genes

Program Settings