Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 2.1e-244 849.7 963 100.0
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 4.4e-141 506.5 962 83.0
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 1.4e-83 315.5 427 53.6
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 1.4e-83 315.5 427 53.6
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 2.6e-80 304.7 535 45.8
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 7.6e-24 117.1 498 26.3
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 4.9e-23 114.4 479 26.7
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 4.9e-23 114.4 493 26.0
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.7e-20 105.9 290 31.0
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 3.0e-20 105.1 284 30.3
PSO384G5055 Papaver somniferum HOM05D004923 ORTHO05D005940 5.1e-20 104.4 299 36.1
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 6.6e-20 104.0 554 24.4
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.5e-19 102.8 524 24.4
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 5.6e-19 100.9 287 29.3
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 9.6e-19 100.1 557 24.4
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.1e-17 96.7 540 26.5
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 1.4e-17 96.3 147 42.2
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.8e-17 95.9 492 25.0
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 2.4e-17 95.5 540 23.0
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 3.1e-17 95.1 309 27.2
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 3.1e-17 95.1 147 40.1
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 1.7e-15 89.4 147 38.8
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 2.2e-15 89.0 546 24.0
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 2.9e-15 88.6 546 23.3
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 2.9e-15 88.6 146 40.4
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.4e-14 86.3 144 35.4
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.9e-14 85.9 144 34.7
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.9e-14 85.9 144 34.7
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 3.2e-14 85.1 147 37.4
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 5.4e-14 84.3 528 33.5
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 7.1e-14 84.0 144 34.0
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 9.3e-14 83.6 143 38.5
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.2e-13 83.2 144 34.0
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 2.1e-13 82.4 146 34.2
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.7e-13 82.0 144 34.0
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.7e-13 82.0 148 39.9
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 3.5e-13 81.6 290 34.5
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.5e-13 81.6 141 39.0
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 6.0e-13 80.9 328 24.1
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 7.8e-13 80.5 444 30.9
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 7.8e-13 80.5 142 39.4
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 7.8e-13 80.5 147 35.4
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 1.0e-12 80.1 535 24.9
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 1.3e-12 79.7 142 39.4
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.3e-12 79.7 141 38.3
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.3e-12 79.7 141 38.3
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.7e-12 79.3 144 37.5
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 1.7e-12 79.3 529 28.5
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 3.0e-12 78.6 415 23.9
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 5.1e-12 77.8 137 38.7
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 5.1e-12 77.8 448 23.9
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 5.1e-12 77.8 142 40.8
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 6.6e-12 77.4 148 37.8
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 6.6e-12 77.4 438 24.9
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 8.7e-12 77.0 144 36.1
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.5e-11 75.5 114 45.6
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 2.5e-11 75.5 142 37.3
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 2.5e-11 75.5 134 38.1
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 4.3e-11 74.7 486 23.0
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 4.3e-11 74.7 480 32.5
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 5.6e-11 74.3 142 40.8
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 9.6e-11 73.6 531 23.5
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.3e-10 73.2 114 44.7
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 2.8e-10 72.0 128 36.7
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 2.8e-10 72.0 146 36.3
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 2.8e-10 72.0 148 38.5
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 3.6e-10 71.6 509 23.0
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 4.8e-10 71.2 371 27.5
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 6.2e-10 70.9 135 41.5
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 6.2e-10 70.9 531 21.8
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.8e-09 69.3 589 24.4
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 3.1e-09 68.6 118 39.8
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 4.0e-09 68.2 450 22.4
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 4.0e-09 68.2 146 37.7
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 4.0e-09 68.2 144 35.4
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 4.0e-09 68.2 525 22.3
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 5.3e-09 67.8 146 35.6
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 5.3e-09 67.8 144 35.4
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 5.3e-09 67.8 132 38.6
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 6.9e-09 67.4 147 38.1
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 6.9e-09 67.4 139 33.1
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 6.9e-09 67.4 139 33.1
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 6.9e-09 67.4 140 34.3
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 9.0e-09 67.0 117 38.5
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 9.0e-09 67.0 545 30.1
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.5e-08 66.2 139 33.1
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 1.5e-08 66.2 408 32.4
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.5e-08 66.2 525 25.7
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 2.0e-08 65.9 529 24.4
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 2.0e-08 65.9 529 24.4
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 2.6e-08 65.5 502 32.5
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 3.4e-08 65.1 110 39.1
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 4.5e-08 64.7 121 39.7
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 4.5e-08 64.7 149 36.2
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 5.8e-08 64.3 272 37.1
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 7.6e-08 63.9 152 32.9
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 7.6e-08 63.9 133 35.3
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 7.6e-08 63.9 113 36.3
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 2.9e-07 62.0 499 35.3
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 6.4e-07 60.8 553 22.6
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 8.4e-07 60.5 427 23.2
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 8.4e-07 60.5 304 24.7
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.1e-06 60.1 143 33.6
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 1.4e-06 59.7 112 37.5
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 1.4e-06 59.7 436 20.6
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 1.9e-06 59.3 469 22.0
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 3.2e-06 58.5 461 29.9
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 4.2e-06 58.2 146 32.2
CDE02G2189 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 5.4e-06 57.8 139 35.3
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 9.3e-06 57.0 287 25.4


User provided reference genes

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