Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 1.2e-186 656.8 418 100.0
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 4.4e-170 601.7 419 90.9
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 1.7e-161 573.2 423 88.7
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 8.7e-118 427.9 313 70.0
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 5.6e-117 425.2 301 71.8
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 1.3e-116 424.1 301 71.1
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 9.9e-114 414.5 301 70.8
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 1.7e-113 413.7 302 70.2
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 2.2e-113 413.3 327 63.6
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 4.9e-113 412.1 303 71.6
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 1.4e-112 410.6 417 61.4
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.9e-112 410.2 358 62.3
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 1.9e-112 410.2 301 68.8
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 7.1e-112 408.3 301 69.1
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 1.2e-111 407.5 302 69.5
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.1e-111 406.8 301 68.1
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.7e-111 406.4 301 67.8
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 6.0e-111 405.2 304 68.4
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 1.0e-110 404.4 301 67.8
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.1e-109 401.0 301 67.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 3.3e-109 399.4 325 65.5
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 3.7e-108 396.0 312 66.3
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 2.4e-107 393.3 302 64.6
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 4.0e-107 392.5 301 66.4
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 4.0e-107 392.5 305 66.6
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 5.3e-107 392.1 301 63.8
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 9.0e-107 391.3 301 66.4
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 9.0e-107 391.3 305 67.5
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 1.2e-106 391.0 301 66.4
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 6.5e-105 385.2 302 65.6
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 1.1e-104 384.4 301 65.1
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 4.2e-104 382.5 301 65.8
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 4.2e-104 382.5 302 64.6
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 5.5e-104 382.1 301 65.1
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 1.2e-103 380.9 302 64.6
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.2e-103 380.9 301 64.8
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 6.0e-103 378.6 337 61.7
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 6.0e-103 378.6 301 64.5
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 1.0e-102 377.9 300 65.0
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 1.0e-102 377.9 301 64.1
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 5.1e-102 375.6 301 64.8
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 5.1e-102 375.6 312 63.1
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 4.3e-101 372.5 332 59.6
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 5.7e-101 372.1 303 62.7
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 7.4e-101 371.7 301 62.5
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 7.4e-101 371.7 302 63.9
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.6e-100 370.5 308 62.7
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.6e-100 370.5 301 63.5
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.6e-100 370.5 301 63.5
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.6e-100 370.5 301 63.5
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 2.8e-100 369.8 301 63.5
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.7e-100 369.4 308 62.7
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 4.8e-100 369.0 308 62.7
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.8e-100 369.0 308 62.3
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 8.2e-100 368.2 308 62.7
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 1.4e-99 367.5 306 63.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.4e-99 367.5 348 56.3
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 4.1e-99 365.9 302 63.6
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 4.1e-99 365.9 324 59.3
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 1.2e-98 364.4 301 61.5
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 7.6e-98 361.7 286 65.4
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 1.3e-97 360.9 302 61.9
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 1.7e-97 360.5 299 62.5
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 3.8e-97 359.4 308 62.3
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 3.8e-97 359.4 302 62.6
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 3.8e-97 359.4 301 63.5
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 3.8e-97 359.4 304 62.8
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 5.0e-97 359.0 286 64.7
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 8.5e-97 358.2 329 58.1
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 1.1e-96 357.8 304 62.5
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 2.5e-96 356.7 303 62.4
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 2.5e-96 356.7 307 62.5
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 2.5e-96 356.7 307 62.5
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 7.2e-96 355.1 307 62.5
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 2.7e-95 353.2 300 62.7
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.6e-95 352.4 301 60.1
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 6.1e-95 352.1 302 60.9
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 7.9e-95 351.7 301 60.5
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 1.0e-94 351.3 302 61.9
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 3.0e-94 349.7 301 60.1
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 3.0e-94 349.7 310 59.4
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 5.1e-94 349.0 327 57.5
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 6.7e-94 348.6 302 60.3
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 6.7e-94 348.6 301 59.5
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 1.1e-93 347.8 304 59.9
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 1.1e-93 347.8 304 59.9
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 1.1e-93 347.8 297 60.3
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 3.3e-93 346.3 308 58.8
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 3.3e-93 346.3 301 59.1
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 3.3e-93 346.3 280 62.9
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 3.3e-93 346.3 319 58.6
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 4.3e-93 345.9 302 59.9
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 4.3e-93 345.9 302 60.6
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 4.3e-93 345.9 302 60.6
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 9.7e-93 344.7 302 59.3
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 2.8e-92 343.2 301 61.1
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 1.4e-91 340.9 301 58.8
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 4.1e-91 339.3 303 58.7
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 2.6e-90 336.7 297 57.9
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 7.7e-90 335.1 302 59.3
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 1.3e-89 334.3 301 58.5
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 6.5e-89 332.0 330 54.8
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 1.4e-88 330.9 283 61.1
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 4.6e-87 325.9 314 56.7
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.8e-86 321.6 415 46.7
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 6.5e-81 305.4 301 56.8
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.4e-78 297.7 337 49.0
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.3e-78 297.0 268 59.0
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 8.2e-76 288.5 301 53.2
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.5e-74 283.1 302 52.6
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 7.0e-67 258.8 266 55.3
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.7e-65 254.2 225 60.9
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.1e-59 235.0 304 43.8
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 1.9e-56 224.2 312 40.4
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 4.2e-56 223.0 206 56.3
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 7.8e-50 202.2 304 44.4
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 2.8e-47 193.7 196 55.6
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 3.2e-43 180.3 131 72.5
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 3.3e-40 170.2 135 63.7
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 7.5e-37 159.1 338 32.5
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.3e-36 158.3 154 55.2
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.9e-36 156.4 132 58.3
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 8.3e-36 155.6 358 31.6
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 3.2e-35 153.7 129 59.7
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 7.0e-35 152.5 112 72.3
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.3e-32 143.7 113 63.7
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 7.3e-32 142.5 171 48.0
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 2.3e-30 137.5 209 43.1
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.1e-27 128.6 234 38.0
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.6e-21 107.5 66 78.8
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 2.9e-20 104.0 97 55.7
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 3.8e-20 103.6 84 63.1
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 2.4e-19 100.9 97 53.6
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.2e-18 98.6 81 63.0
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.2e-18 98.6 158 41.1
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 2.1e-18 97.8 168 36.3
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 1.5e-16 91.7 330 26.1
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.9e-16 91.3 56 78.6
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 2.5e-16 90.9 53 81.1
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 4.3e-16 90.1 62 71.0
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 5.6e-16 89.7 62 74.2
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.6e-15 87.0 131 45.8
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 6.2e-15 86.3 56 73.2
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 1.4e-14 85.1 133 42.1
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 2.4e-14 84.3 171 33.9
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 3.4e-13 80.5 322 28.6
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 9.9e-13 79.0 102 48.0
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 8.4e-12 75.9 61 55.7
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 7.1e-11 72.8 44 77.3
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.0e-09 67.4 73 52.1


User provided reference genes

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