Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 3.7e-171 604.7 302 100.0
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.9e-170 602.4 302 99.7
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.7e-107 393.3 303 67.0
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 5.0e-107 391.7 334 62.6
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 9.4e-106 387.5 290 67.9
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 1.8e-104 383.3 303 66.0
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 5.2e-104 381.7 299 64.5
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 1.3e-102 377.1 305 66.6
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 2.2e-102 376.3 294 67.0
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 2.4e-101 372.9 299 63.9
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 4.1e-101 372.1 300 64.0
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.0e-99 367.5 305 61.3
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.0e-99 367.5 305 61.3
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 2.9e-99 365.9 297 64.0
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 2.9e-99 365.9 300 62.7
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 5.0e-99 365.2 299 64.5
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 5.0e-99 365.2 299 61.9
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 1.1e-98 364.0 306 62.4
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 1.5e-98 363.6 296 62.8
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.9e-98 363.2 229 76.0
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 7.2e-98 361.3 303 63.4
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 9.4e-98 360.9 301 60.8
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 4.7e-97 358.6 250 69.2
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 1.4e-96 357.1 300 61.7
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.4e-96 357.1 299 61.5
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.8e-96 356.7 307 64.2
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 1.8e-96 356.7 307 64.2
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 1.8e-96 356.7 300 61.0
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 3.0e-96 355.9 217 77.4
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.0e-96 355.5 299 60.2
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 4.0e-96 355.5 297 62.0
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 6.8e-96 354.8 301 63.5
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 8.8e-96 354.4 257 68.1
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 8.8e-96 354.4 305 61.6
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.4e-95 352.4 299 60.2
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 5.7e-95 351.7 302 62.3
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.3e-94 350.5 313 57.8
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 1.7e-94 350.1 217 77.4
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.7e-94 350.1 313 58.1
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 1.7e-94 350.1 238 72.3
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 6.3e-94 348.2 374 52.9
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 8.3e-94 347.8 318 57.5
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 4.1e-93 345.5 284 65.1
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 7.0e-93 344.7 307 60.3
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 4.5e-92 342.0 331 55.0
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 5.9e-92 341.7 301 59.8
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.0e-91 340.9 299 60.9
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 2.2e-91 339.7 314 58.6
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 1.1e-90 337.4 247 65.6
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 1.1e-90 337.4 278 65.1
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 1.5e-90 337.0 234 70.5
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.9e-90 336.7 327 57.2
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.9e-90 336.7 314 58.0
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 2.5e-90 336.3 234 70.9
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 2.5e-90 336.3 234 70.5
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 5.5e-90 335.1 299 59.2
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 7.2e-90 334.7 234 70.5
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 7.2e-90 334.7 234 70.5
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.2e-89 334.0 234 70.1
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 1.2e-89 334.0 305 58.4
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 2.7e-89 332.8 286 60.5
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 2.7e-89 332.8 303 58.7
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 2.7e-89 332.8 256 66.0
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 3.6e-89 332.4 316 57.6
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 1.4e-88 330.5 301 56.8
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 1.4e-88 330.5 329 56.2
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 1.4e-88 330.5 286 63.6
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 2.3e-88 329.7 329 55.9
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 3.0e-88 329.3 297 57.6
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 1.2e-87 327.4 202 75.2
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 2.0e-87 326.6 239 66.9
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 1.1e-85 320.9 220 71.8
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.6e-84 317.0 303 56.1
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 3.5e-84 315.8 272 60.7
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 2.3e-83 313.2 266 64.3
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 3.8e-83 312.4 223 65.5
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 5.0e-83 312.0 214 68.2
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 6.6e-83 311.6 194 74.2
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 3.3e-82 309.3 305 56.4
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 5.6e-82 308.5 213 69.0
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 2.9e-78 296.2 174 79.9
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 7.0e-77 291.6 202 71.3
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.6e-76 290.4 279 58.1
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 4.3e-74 282.3 263 56.7
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 3.6e-73 279.3 294 55.1
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 5.2e-72 275.4 299 52.8
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 4.0e-64 249.2 462 37.7
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 7.5e-63 245.0 236 55.1
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 9.8e-63 244.6 180 65.6
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 2.7e-60 236.5 190 64.2
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.0e-59 234.6 271 48.0
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 7.3e-58 228.4 180 61.7
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 4.4e-55 219.2 226 50.4
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 5.1e-51 205.7 222 45.9
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 8.6e-51 204.9 271 45.0
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.1e-50 204.5 184 59.8
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 4.0e-48 196.1 223 42.2
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 3.4e-47 193.0 207 47.3
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 2.9e-46 189.9 156 57.7
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 2.9e-46 189.9 261 44.4
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 6.4e-46 188.7 291 42.6
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 8.7e-43 178.3 242 46.3
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 5.6e-42 175.6 157 58.0
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 1.3e-41 174.5 202 43.1
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.8e-40 170.6 148 58.8
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 2.3e-35 153.7 277 40.8
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 1.9e-34 150.6 150 53.3
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 8.7e-27 125.2 69 81.2
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.4e-24 117.1 69 76.8
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 1.1e-21 108.2 206 31.6
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 6.7e-19 99.0 57 82.5
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 9.6e-18 95.1 110 50.0
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 7.9e-12 75.5 98 41.8
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.6e-09 67.8 49 65.3
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 2.8e-09 67.0 49 63.3
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 3.7e-09 66.6 173 30.6
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.2e-09 65.5 38 81.6
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.2e-09 65.5 38 81.6
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.2e-09 65.5 38 81.6
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.2e-09 65.5 38 81.6
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.2e-09 65.5 38 81.6
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.2e-09 65.5 38 81.6
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.2e-09 65.5 38 81.6
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 2.4e-08 63.9 45 62.2
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 7.7e-07 58.9 57 50.9
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 7.7e-07 58.9 59 49.2
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 1.0e-06 58.5 59 49.2
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 1.0e-06 58.5 59 49.2
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 1.3e-06 58.2 29 79.3
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 2.2e-06 57.4 66 47.0
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 3.8e-06 56.6 68 47.1
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 6.5e-06 55.8 44 56.8
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 8.5e-06 55.5 29 75.9


User provided reference genes

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