Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 0.0e+00 1717.2 1051 100.0
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 0.0e+00 1607.4 1052 91.6
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 1.6e-115 421.8 1406 33.9
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.2e-112 412.1 1370 37.2
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 2.8e-112 411.0 1392 35.1
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.2e-109 401.4 1738 32.9
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 8.6e-106 389.4 1438 34.3
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 2.5e-105 387.9 1453 35.4
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 2.5e-105 387.9 1515 37.4
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 2.5e-105 387.9 1454 36.2
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 3.3e-105 387.5 1681 34.0
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.6e-105 386.7 1345 34.9
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 9.5e-105 386.0 1341 33.0
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 1.6e-104 385.2 1474 35.5
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 7.5e-102 376.3 1681 33.3
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 9.9e-102 375.9 1363 34.6
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 3.7e-101 374.0 1534 34.3
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.1e-100 372.5 1366 34.8
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 7.1e-100 369.8 1368 32.7
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.2e-99 369.0 1339 35.3
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 1.7e-98 365.2 1335 34.2
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 1.7e-98 365.2 1461 34.4
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 4.3e-97 360.5 1513 34.9
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 9.9e-94 349.4 1369 35.6
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 2.2e-93 348.2 1390 32.2
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 2.4e-92 344.7 1263 34.7
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 7.1e-92 343.2 1356 35.7
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 4.6e-91 340.5 1409 31.7
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 6.0e-91 340.1 1563 31.7
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 7.8e-91 339.7 1565 33.1
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 7.8e-91 339.7 1565 33.1
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 7.8e-91 339.7 1565 33.1
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.3e-90 338.2 1417 32.0
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.3e-90 338.2 1416 32.2
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 4.3e-89 334.0 1352 35.9
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 1.6e-88 332.0 1385 33.6
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 3.6e-88 330.9 1284 36.6
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 4.7e-88 330.5 1281 35.3
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 3.1e-87 327.8 1550 31.9
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.9e-87 326.6 738 44.2
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 5.8e-86 323.6 1772 32.6
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 2.2e-85 321.6 1440 31.2
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 4.9e-85 320.5 1535 30.8
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 4.9e-85 320.5 1419 32.8
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 1.1e-84 319.3 1391 33.4
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 1.4e-84 318.9 1328 35.4
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 1.9e-84 318.5 1381 35.2
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 4.2e-84 317.4 1334 34.0
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 7.1e-84 316.6 229 70.3
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 1.6e-83 315.5 1462 33.7
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 5.6e-81 307.0 1297 36.4
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 4.8e-80 303.9 1291 31.8
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 5.3e-79 300.4 230 66.1
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 9.0e-79 299.7 1486 32.2
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 2.2e-77 295.0 1310 34.8
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 6.4e-77 293.5 1323 33.9
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 5.4e-76 290.4 704 47.3
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 5.4e-76 290.4 1396 29.8
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 1.6e-75 288.9 1363 34.3
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 4.6e-75 287.3 215 69.8
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 3.0e-74 284.6 1028 31.4
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 5.1e-74 283.9 1393 31.1
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 3.3e-73 281.2 215 67.4
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 9.6e-73 279.6 1297 33.8
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 4.8e-72 277.3 1252 30.9
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 6.2e-72 276.9 1446 32.0
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 1.1e-71 276.2 1442 32.8
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 3.1e-71 274.6 1491 31.5
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 6.9e-71 273.5 160 76.9
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 5.8e-70 270.4 1426 31.5
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 4.9e-69 267.3 1702 30.7
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 8.4e-69 266.5 173 71.7
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 1.9e-68 265.4 1220 30.5
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 3.2e-68 264.6 1449 33.2
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 8.7e-66 256.5 205 63.9
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 3.3e-65 254.6 1296 34.7
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 7.4e-65 253.4 1470 32.2
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 1.3e-64 252.7 1324 34.4
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 1.6e-64 252.3 1617 30.6
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 6.2e-64 250.4 140 81.4
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 1.4e-63 249.2 1186 34.7
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 2.2e-61 241.9 737 37.7
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 8.4e-61 240.0 1196 32.2
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 1.9e-60 238.8 1193 33.0
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 2.3e-58 231.9 1327 30.6
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 3.0e-58 231.5 1330 31.1
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 3.9e-58 231.1 726 37.9
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 3.4e-54 218.0 579 36.8
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.5e-52 211.8 476 41.4
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 1.8e-47 195.7 187 53.5
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.1e-47 194.9 102 85.3
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 2.6e-46 191.8 168 57.1
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 3.4e-46 191.4 103 77.7
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 3.2e-44 184.9 145 66.2
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 6.7e-42 177.2 366 38.8
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.7e-40 172.6 404 37.1
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 4.8e-40 171.0 1021 26.0
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.0e-38 165.6 375 39.7
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 6.5e-37 160.6 161 54.7
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.1e-36 159.8 559 34.3
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.2e-36 158.3 561 34.6
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 9.4e-36 156.8 188 46.3
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 1.1e-33 149.8 378 36.2
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 4.4e-33 147.9 203 43.8
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 9.7e-33 146.7 152 50.7
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.7e-32 146.0 77 83.1
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.7e-32 146.0 77 83.1
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 2.2e-32 145.6 419 32.0
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 4.1e-31 141.4 590 30.2
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 3.5e-30 138.3 713 31.4
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 6.7e-26 124.0 118 55.9
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 5.7e-25 120.9 637 29.7
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 7.5e-25 120.6 353 36.0
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 3.7e-24 118.2 116 56.0
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 2.2e-21 109.0 363 30.0
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.9e-20 105.9 244 36.9
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 1.9e-20 105.9 677 35.5
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.2e-20 105.1 94 58.5
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 3.4e-17 95.1 575 32.3
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 4.8e-16 91.3 359 27.9
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 3.5e-14 85.1 131 32.8
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 7.7e-14 84.0 140 26.4
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 3.8e-13 81.6 182 28.6
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 3.8e-13 81.6 115 33.0
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 1.5e-12 79.7 114 33.3
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 1.5e-12 79.7 303 30.0
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 1.5e-12 79.7 62 58.1
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.5e-12 79.0 223 34.5
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 4.2e-12 78.2 114 32.5
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 2.3e-10 72.4 54 61.1
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 2.8e-08 65.5 205 31.7
Nn2g14614 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.4e-07 63.2 92 45.7
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.2e-06 60.1 43 62.8


User provided reference genes

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