Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 9.8e-124 446.8 227 100.0
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.9e-123 445.3 227 99.6
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.9e-123 445.3 227 99.6
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 2.6e-108 395.6 222 88.7
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.3e-107 393.3 222 86.9
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.1e-106 390.2 222 86.5
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.3e-104 383.3 222 85.1
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 3.3e-103 378.6 222 83.8
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 5.6e-103 377.9 222 82.9
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 5.6e-103 377.9 222 83.3
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 7.3e-103 377.5 222 84.2
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 7.3e-103 377.5 218 83.9
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 9.6e-103 377.1 222 84.7
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.1e-102 375.9 221 84.2
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 2.8e-102 375.6 222 83.3
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 3.6e-102 375.2 222 83.3
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 6.2e-102 374.4 222 82.9
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.4e-101 373.2 218 83.9
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 4.0e-101 371.7 218 82.1
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 4.0e-101 371.7 224 80.8
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 6.8e-101 370.9 218 81.7
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 6.8e-101 370.9 216 82.4
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 8.9e-101 370.5 222 83.3
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.5e-100 369.8 216 81.5
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 2.6e-100 369.0 216 82.9
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 3.4e-100 368.6 220 81.4
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 4.4e-100 368.2 221 82.4
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 7.6e-100 367.5 219 82.6
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 9.9e-100 367.1 221 81.0
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 9.9e-100 367.1 213 83.6
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.3e-99 366.7 219 83.1
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 2.2e-99 365.9 219 82.2
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 2.9e-99 365.5 221 82.8
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 4.9e-99 364.8 221 81.4
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 6.4e-99 364.4 217 81.6
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 8.4e-99 364.0 219 82.2
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 8.4e-99 364.0 214 84.6
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.4e-98 363.2 215 81.4
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.4e-98 363.2 223 79.4
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.9e-98 362.8 222 79.3
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.9e-98 362.8 221 81.4
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 1.9e-98 362.8 213 81.7
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.9e-98 362.8 223 79.4
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.4e-98 362.5 224 81.7
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 3.2e-98 362.1 215 81.4
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 7.1e-98 360.9 266 70.3
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.2e-97 360.1 217 80.2
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.2e-97 360.1 220 79.5
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 2.1e-97 359.4 220 79.1
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 2.1e-97 359.4 220 79.1
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.1e-97 359.4 257 72.4
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 2.7e-97 359.0 215 80.5
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.7e-97 359.0 218 81.7
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.7e-97 359.0 217 79.7
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 4.6e-97 358.2 219 81.7
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.3e-96 356.7 217 78.8
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.7e-96 356.3 217 78.8
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 2.3e-96 355.9 211 80.6
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.3e-96 355.9 217 79.3
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.0e-96 355.5 217 78.8
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 3.0e-96 355.5 232 76.3
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 3.0e-96 355.5 215 79.5
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 3.9e-96 355.1 217 78.8
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 3.9e-96 355.1 219 80.4
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 8.7e-96 354.0 219 79.9
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.9e-95 352.8 221 78.3
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.5e-95 352.4 217 79.3
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.5e-95 352.4 215 80.0
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 4.3e-95 351.7 221 78.3
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 4.3e-95 351.7 219 79.5
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 9.6e-95 350.5 221 77.8
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.3e-94 350.1 222 77.0
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 2.1e-94 349.4 219 79.0
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 2.8e-94 349.0 222 77.5
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 4.8e-94 348.2 222 77.0
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 8.1e-94 347.4 218 77.5
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.1e-93 347.1 217 78.3
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 2.4e-93 345.9 212 78.3
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 5.3e-93 344.7 218 77.1
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.2e-92 343.6 221 75.6
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 2.6e-92 342.4 219 76.3
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.6e-92 342.4 215 78.6
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 3.4e-92 342.0 219 76.7
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 2.2e-91 339.3 222 78.8
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 4.9e-91 338.2 224 74.6
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 7.1e-90 334.3 220 75.5
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 7.1e-90 334.3 222 76.1
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 7.1e-90 334.3 222 74.3
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 9.3e-90 334.0 267 64.4
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.7e-89 332.4 217 73.7
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.5e-89 332.0 217 74.2
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 3.9e-88 328.6 217 72.8
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 3.9e-88 328.6 216 72.2
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 5.1e-88 328.2 217 74.2
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 5.1e-88 328.2 217 74.2
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 6.6e-88 327.8 219 73.5
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 8.7e-88 327.4 217 72.8
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 8.7e-88 327.4 221 73.8
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.6e-86 323.2 217 71.9
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.6e-86 323.2 217 71.9
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 3.6e-86 322.0 217 71.4
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 8.1e-86 320.9 219 70.8
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 2.4e-85 319.3 219 70.3
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 9.0e-85 317.4 219 74.0
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.4e-84 315.5 220 70.5
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 3.2e-82 308.9 184 81.5
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.2e-81 307.0 215 69.3
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.8e-80 303.1 217 70.5
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.9e-80 302.0 210 69.5
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 6.7e-80 301.2 217 67.7
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.3e-78 297.0 212 66.5
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 4.8e-78 295.0 214 66.8
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 1.4e-77 293.5 212 68.9
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.2e-76 290.4 177 79.1
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.3e-71 272.3 180 73.3
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 8.2e-70 267.7 198 67.7
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 6.3e-62 241.5 141 82.3
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.4e-56 223.8 128 84.4
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 7.4e-55 218.0 137 79.6
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.3e-54 217.2 226 50.9
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 3.1e-53 212.6 122 83.6
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 4.1e-53 212.2 132 79.5
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 5.3e-53 211.8 122 83.6
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 8.2e-46 188.0 159 63.5
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 8.5e-43 177.9 112 76.8
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 2.7e-41 172.9 126 71.4
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.0e-40 169.5 124 66.1
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.1e-37 161.0 107 72.0
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.1e-37 159.5 92 84.8
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.0e-36 156.8 95 81.1
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 3.6e-33 146.0 164 45.7
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 6.8e-32 141.7 202 42.6
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.6e-31 139.8 90 75.6
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 9.8e-31 137.9 88 71.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 9.1e-29 131.3 219 36.1
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.6e-28 130.6 189 38.1
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.3e-27 127.5 78 76.9
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 3.2e-26 122.9 200 39.5
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 3.2e-26 122.9 187 37.4
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.6e-25 120.6 93 64.5
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.4e-24 117.5 219 33.3
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 8.8e-24 114.8 198 36.9
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 2.6e-23 113.2 73 75.3
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.7e-22 110.5 204 36.3
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 2.2e-22 110.2 71 73.2
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 2.8e-22 109.8 75 73.3
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 6.3e-22 108.6 88 63.6
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 6.3e-22 108.6 194 35.6
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 4.1e-21 105.9 83 67.5
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 2.0e-20 103.6 61 78.7
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.0e-19 101.3 170 34.1
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.1e-18 97.8 60 76.7
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 9.5e-18 94.7 63 73.0
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.6e-17 94.0 58 77.6
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 8.0e-17 91.7 70 65.7
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.0e-15 87.0 53 79.2
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 2.9e-14 83.2 59 67.8
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 6.4e-14 82.0 68 61.8
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.4e-13 80.9 45 80.0
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 3.0e-11 73.2 57 64.9
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 5.0e-11 72.4 91 48.4
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 5.6e-10 68.9 66 56.1
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 9.5e-10 68.2 68 52.9
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 1.6e-09 67.4 65 53.8
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 2.1e-09 67.0 64 54.7
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 6.2e-09 65.5 59 55.9
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.8e-08 63.9 57 57.9
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 2.0e-07 60.5 38 76.3
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 5.8e-07 58.9 48 60.4


User provided reference genes

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