Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 9.9e-253 876.3 449 100.0
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.1e-242 842.0 449 96.0
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-171 607.1 455 70.8
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 8.4e-143 511.1 451 63.0
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 2.7e-141 506.1 448 63.2
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.9e-123 446.8 450 55.3
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.9e-115 420.2 416 54.3
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.3e-114 417.5 467 52.7
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.3e-114 417.5 450 53.6
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.6e-114 417.2 459 51.6
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 5.3e-113 412.1 465 49.5
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.5e-112 410.6 455 50.1
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 7.7e-112 408.3 418 53.6
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 4.2e-110 402.5 450 50.7
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 4.2e-110 402.5 455 49.9
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 5.5e-110 402.1 441 49.4
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.2e-109 401.0 456 51.1
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 2.1e-109 400.2 461 49.2
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 3.6e-109 399.4 461 49.7
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.0e-108 397.9 448 51.3
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.4e-108 397.5 415 54.7
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.3e-108 396.7 456 51.8
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 3.9e-108 396.0 457 51.0
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 8.8e-108 394.8 453 50.6
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 8.8e-108 394.8 453 50.6
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 2.0e-107 393.7 426 50.5
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.5e-107 393.3 456 51.5
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.3e-106 391.0 465 49.5
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.7e-106 390.6 465 49.9
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.2e-106 390.2 458 50.2
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.2e-106 390.2 444 51.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 2.2e-106 390.2 409 55.0
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 6.3e-106 388.7 427 49.9
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 8.2e-106 388.3 420 53.3
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.1e-105 387.9 461 49.0
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.4e-105 386.7 427 52.0
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 5.3e-105 385.6 455 48.4
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 9.1e-105 384.8 432 51.9
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.1e-105 384.8 454 48.9
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.2e-104 384.4 461 48.6
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.2e-104 384.4 418 51.4
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 4.5e-104 382.5 445 49.4
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 7.7e-104 381.7 435 50.3
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.0e-103 379.0 455 49.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.0e-103 379.0 451 49.9
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 9.4e-102 374.8 456 49.3
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 3.0e-100 369.8 461 47.9
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 3.9e-100 369.4 448 47.1
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 6.7e-100 368.6 453 48.1
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 8.8e-100 368.2 442 49.8
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.7e-98 364.0 459 46.4
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.7e-98 364.0 420 48.8
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 3.7e-98 362.8 449 48.1
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.7e-98 362.8 458 46.7
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 6.3e-98 362.1 465 46.9
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.1e-97 361.3 458 47.2
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.1e-97 361.3 474 46.2
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 2.4e-97 360.1 461 45.8
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.5e-96 357.5 468 45.9
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 2.6e-96 356.7 456 47.4
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 5.9e-96 355.5 463 46.7
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.0e-95 354.8 469 46.9
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 3.8e-95 352.8 370 50.8
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 6.5e-95 352.1 456 46.7
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.9e-94 350.5 460 46.3
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 2.1e-93 347.1 529 41.6
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 3.6e-93 346.3 374 49.5
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.9e-92 342.8 416 46.4
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 5.2e-92 342.4 450 45.1
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 6.7e-92 342.0 419 48.9
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 8.8e-92 341.7 383 50.4
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.1e-91 341.3 452 46.5
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.0e-91 340.5 416 46.4
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 3.3e-91 339.7 473 43.6
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.4e-91 338.6 450 44.7
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.2e-90 337.0 423 44.9
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.2e-90 337.0 437 45.1
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 2.8e-90 336.7 373 48.5
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 6.3e-90 335.5 372 50.0
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.4e-89 334.3 450 44.9
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.8e-89 334.0 384 47.7
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.4e-89 333.6 445 44.9
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 5.3e-89 332.4 458 41.7
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 7.0e-89 332.0 412 47.1
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 9.1e-89 331.6 372 48.4
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 1.2e-88 331.3 377 49.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 4.5e-88 329.3 412 46.8
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 7.7e-88 328.6 408 47.8
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 7.7e-88 328.6 465 42.8
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 2.2e-87 327.0 413 46.2
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.2e-87 327.0 449 43.7
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 3.8e-87 326.2 490 43.1
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.8e-87 326.2 459 42.0
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.8e-87 326.2 329 52.3
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 8.5e-87 325.1 413 46.0
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.5e-86 324.3 402 45.5
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.2e-86 323.2 465 43.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 9.4e-86 321.6 463 43.0
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.2e-85 321.2 418 43.3
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.6e-85 320.9 449 44.3
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.6e-85 319.7 457 43.1
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 3.0e-84 316.6 452 42.9
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 3.0e-84 316.6 385 45.2
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.0e-84 316.2 460 42.6
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.0e-84 316.2 460 42.4
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 5.2e-84 315.8 314 52.5
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 6.8e-84 315.5 465 42.6
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 6.8e-84 315.5 354 49.7
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.8e-84 315.5 420 45.7
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 8.8e-84 315.1 592 37.2
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.2e-83 314.7 470 41.7
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.7e-83 312.4 423 43.3
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 2.2e-82 310.5 433 42.7
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 3.7e-82 309.7 421 43.0
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 3.7e-82 309.7 421 43.2
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 4.8e-82 309.3 427 42.4
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.1e-81 306.2 392 44.1
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 7.0e-81 305.4 375 44.8
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 7.0e-81 305.4 442 42.1
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 9.1e-81 305.1 433 42.0
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.7e-80 303.5 455 41.5
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.7e-80 303.5 324 53.7
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.7e-79 300.8 472 41.3
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 5.0e-79 299.3 405 42.5
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.1e-78 298.1 469 40.7
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 4.0e-76 289.7 375 44.5
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.0e-75 287.3 395 43.0
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.6e-75 287.0 419 41.8
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.3e-74 284.6 365 45.5
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.5e-72 276.2 367 42.2
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 5.9e-72 275.8 287 52.3
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 7.7e-72 275.4 468 39.5
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.3e-71 274.6 329 49.5
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.5e-70 270.4 374 43.3
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.3e-70 270.0 313 48.9
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 5.5e-70 269.2 364 43.7
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 8.0e-69 265.4 338 45.9
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 6.8e-68 262.3 348 46.0
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.2e-67 261.5 366 43.7
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 7.0e-65 252.3 318 45.0
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 9.2e-65 251.9 318 44.7
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.2e-64 251.5 429 37.8
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 4.5e-64 249.6 357 45.1
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 7.8e-64 248.8 359 44.8
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.6e-61 241.1 400 39.2
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.0e-60 236.5 367 39.8
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.8e-59 232.6 314 40.1
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 9.8e-59 231.9 301 41.5
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 5.4e-57 226.1 215 55.8
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 9.2e-57 225.3 398 38.2
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.2e-56 224.9 240 50.8
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 4.3e-54 216.5 309 42.7
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 3.2e-49 200.3 419 34.8
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.5e-48 196.8 342 34.8
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 4.6e-48 196.4 246 45.1
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 2.5e-46 190.7 278 40.3
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 4.7e-45 186.4 145 64.8
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.1e-44 185.3 212 46.7
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.8e-44 184.5 205 49.3
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 2.3e-39 167.5 370 34.9
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.1e-38 165.2 271 39.9
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.6e-37 161.4 203 46.3
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.5e-35 154.8 279 36.6
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.4e-33 148.3 146 52.1
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 6.9e-28 129.4 214 41.1
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.6e-24 116.7 103 60.2
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 6.0e-24 116.3 198 38.9
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.0e-23 115.5 204 36.8
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 8.1e-21 105.9 175 39.4
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.4e-20 105.1 130 45.4
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.4e-19 100.5 195 36.4
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 8.7e-15 85.9 67 61.2
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.9e-14 84.7 66 60.6
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 4.8e-13 80.1 123 38.2
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.4e-12 77.8 72 51.4
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.9e-12 76.3 92 46.7
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 4.9e-10 70.1 51 58.8
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 2.5e-06 57.8 51 58.8
Cfa025524 Carpinus fangiana HOM05D003737 ORTHO05D123641 4.3e-06 57.0 169 27.2


User provided reference genes

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