Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6331 Papaver somniferum HOM05D003018 ORTHO05D003402 5.9e-43 177.2 93 100.0
PSO210G3039 Papaver somniferum HOM05D003018 ORTHO05D003402 5.9e-43 177.2 93 100.0
PSO017G0083 Papaver somniferum HOM05D003018 ORTHO05D003402 2.7e-27 125.2 76 85.5
PSO724G0429 Papaver somniferum HOM05D003018 ORTHO05D003402 3.5e-27 124.8 76 84.2
PSO729G0279 Papaver somniferum HOM05D003018 ORTHO05D003402 1.0e-26 123.2 76 84.2
PSO782G4498 Papaver somniferum HOM05D003018 ORTHO05D003402 1.9e-17 92.4 76 69.7
PSO339G1784 Papaver somniferum HOM05D003018 ORTHO05D003402 1.1e-15 86.7 76 63.2
PSO832G1145 Papaver somniferum HOM05D003018 ORTHO05D003402 3.4e-14 81.6 76 59.2
Gohir.A11G017100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 9.3e-12 73.6 84 48.8
Gohir.D11G016900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 9.3e-12 73.6 84 48.8
PSO017G1017 Papaver somniferum HOM05D003018 ORTHO05D003402 1.2e-11 73.2 84 48.8
PSO478G2764 Papaver somniferum HOM05D003018 ORTHO05D003402 1.2e-11 73.2 84 48.8
Oeu017358.1 Olea europaea HOM05D003018 ORTHO05D003402 1.6e-11 72.8 81 50.6
Rhsim03G0218500 Rhododendron simsii HOM05D003018 ORTHO05D003402 2.1e-11 72.4 83 48.2
Lsat_1_v5_gn_8_4220 Lactuca sativa HOM05D003018 ORTHO05D003402 2.7e-11 72.0 84 44.0
Glyma.04G225600 Glycine max HOM05D003018 ORTHO05D003402 4.6e-11 71.2 94 46.8
Ca_16839_v3 Cicer arietinum L. HOM05D003018 ORTHO05D003402 6.0e-11 70.9 81 49.4
Eucgr.A00976 Eucalyptus grandis HOM05D003018 ORTHO05D003402 6.0e-11 70.9 81 49.4
Phvul.009G040400 Phaseolus vulgaris HOM05D003018 ORTHO05D003402 6.0e-11 70.9 84 46.4
QL09p005993 Quercus lobata HOM05D003018 ORTHO05D003402 6.0e-11 70.9 81 48.1
SalBow4G0431 Salvia bowleyana HOM05D003018 ORTHO05D003402 6.0e-11 70.9 81 49.4
Glyma.06G139200 Glycine max HOM05D003018 ORTHO05D003402 7.8e-11 70.5 81 49.4
arahy.Tifrunner.gnm1.ann1.KA8TW6 Arachis hypogaea HOM05D003018 ORTHO05D003402 1.0e-10 70.1 81 48.1
arahy.Tifrunner.gnm1.ann1.SR3247 Arachis hypogaea HOM05D003018 ORTHO05D003402 1.0e-10 70.1 81 48.1
CANSAT21G0709 Cannabis sativa HOM05D003018 ORTHO05D003402 1.0e-10 70.1 84 46.4
Migut.F00122 Erythranthe guttata HOM05D003018 ORTHO05D003402 1.0e-10 70.1 84 46.4
Gorai.007G017700 Gossypium raimondii HOM05D003018 ORTHO05D003402 1.0e-10 70.1 74 51.4
VMungo1309G0595 Vigna mungo HOM05D003018 ORTHO05D003402 1.0e-10 70.1 84 46.4
Actinidia08721 Actinidia chinensis HOM05D003018 ORTHO05D003402 1.3e-10 69.7 81 49.4
Prupe.2G322200 Prunus persica HOM05D003018 ORTHO05D003402 1.3e-10 69.7 81 48.1
vmacro06475 Vaccinium macrocarpon HOM05D003018 ORTHO05D003402 1.3e-10 69.7 81 48.1
DCAR_010557 Daucus carota HOM05D003018 ORTHO05D003402 1.7e-10 69.3 84 46.4
Gohir.A12G244400 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.7e-10 69.3 81 48.1
Gohir.D12G245300 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.7e-10 69.3 81 48.1
Gorai.008G262900 Gossypium raimondii HOM05D003018 ORTHO05D003402 1.7e-10 69.3 81 48.1
HanXRQChr10g0283991 Helianthus annuus HOM05D003018 ORTHO05D003402 1.7e-10 69.3 81 49.4
HanXRQChr16g0499771 Helianthus annuus HOM05D003018 ORTHO05D003402 1.7e-10 69.3 81 49.4
MSTRG.26952 Avicennia marina HOM05D003018 ORTHO05D003402 2.3e-10 68.9 81 49.4
Lalb_Chr23g0272051 Lupinus albus HOM05D003018 ORTHO05D003402 2.3e-10 68.9 81 46.9
MD01G1231500 Malus domestica HOM05D003018 ORTHO05D003402 3.0e-10 68.6 81 46.9
MD07G1303500 Malus domestica HOM05D003018 ORTHO05D003402 3.0e-10 68.6 81 46.9
Nn2g15903 Nelumbo nucifera HOM05D003018 ORTHO05D003402 3.0e-10 68.6 81 48.1
Actinidia34288 Actinidia chinensis HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 48.1
CAN.G303.60 Capsicum annuum HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 46.9
Duzib068G0518 Durio zibethinus HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 46.9
Eucgr.K00480 Eucalyptus grandis HOM05D003018 ORTHO05D003402 3.9e-10 68.2 84 45.2
Nitab4.5_0000021g0210 Nicotiana tabacum HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 46.9
Nitab4.5_0007121g0040 Nicotiana tabacum HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 46.9
Solyc03g079940.3 Solanum lycopersicum HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 46.9
Sopen03g027480 Solanum pennellii HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 46.9
PGSC0003DMG400000572 Solanum tuberosum HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 46.9
SGA_v2.0_scaffold165G38214 Striga asiatica HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 46.9
Thecc.03G212100 Theobroma cacao HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 46.9
GSVIVG01038683001 Vitis vinifera HOM05D003018 ORTHO05D003402 3.9e-10 68.2 81 46.9
Aqoxy5G02912 Aquilegia oxysepala HOM05D003018 ORTHO05D003402 5.1e-10 67.8 84 44.0
Gorai.006G203900 Gossypium raimondii HOM05D003018 ORTHO05D003402 5.1e-10 67.8 74 47.3
Lj1g0024936 Lotus japonicus HOM05D003018 ORTHO05D003402 5.1e-10 67.8 84 46.4
Peaxi162Scf01026g00260 Petunia axillaris HOM05D003018 ORTHO05D003402 5.1e-10 67.8 84 45.2
Potri.012G004600 Populus trichocarpa HOM05D003018 ORTHO05D003402 5.1e-10 67.8 74 50.0
TAR375G0624 Trochodendron aralioides HOM05D003018 ORTHO05D003402 5.1e-10 67.8 81 46.9
Dinv29191 Davidia involucrata HOM05D003018 ORTHO05D003402 6.6e-10 67.4 84 44.0
Potri.015G000600 Populus trichocarpa HOM05D003018 ORTHO05D003402 6.6e-10 67.4 81 48.1
PGR042G2079 Punica granatum HOM05D003018 ORTHO05D003402 6.6e-10 67.4 81 46.9
CSS0041512 Camellia sinensis var. sinensis HOM05D003018 ORTHO05D003402 8.7e-10 67.0 84 44.0
Duzib205G1477 Durio zibethinus HOM05D003018 ORTHO05D003402 8.7e-10 67.0 74 48.6
CDE02G1662 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 1.1e-09 66.6 81 49.4
Migut.F00968 Erythranthe guttata HOM05D003018 ORTHO05D003402 1.5e-09 66.2 84 44.0
Gohir.A09G187100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.5e-09 66.2 74 47.3
Lsat_1_v5_gn_2_135421 Lactuca sativa HOM05D003018 ORTHO05D003402 1.5e-09 66.2 85 43.5
unitig_62.g23859 Utricularia gibba HOM05D003018 ORTHO05D003402 1.5e-09 66.2 77 45.5
unitig_64.g29776 Utricularia gibba HOM05D000525 ORTHO05D001368 1.5e-09 66.2 77 45.5
Duzib084G0455 Durio zibethinus HOM05D003018 ORTHO05D003402 1.9e-09 65.9 81 46.9
Lalb_Chr11g0067561 Lupinus albus HOM05D003018 ORTHO05D003402 1.9e-09 65.9 81 45.7
PGR142G0210 Punica granatum HOM05D003018 ORTHO05D003402 1.9e-09 65.9 84 42.9
Medtr3g093380 Medicago truncatula HOM05D003018 ORTHO05D003402 2.5e-09 65.5 74 47.3
TAR374G1266 Trochodendron aralioides HOM05D003018 ORTHO05D003402 2.5e-09 65.5 74 48.6
Atru.chr12.2500 Acer truncatum HOM05D003018 ORTHO05D003402 3.3e-09 65.1 84 41.7
Atru.chr12.2524 Acer truncatum HOM05D003018 ORTHO05D003402 3.3e-09 65.1 84 41.7
ATR0582G341 Amborella trichopoda HOM05D003018 ORTHO05D003402 3.3e-09 65.1 84 44.0
MELO3C005915.2 Cucumis melo HOM05D003018 ORTHO05D003402 3.3e-09 65.1 84 44.0
CsaV3_5G000150 Cucumis sativus L. HOM05D003018 ORTHO05D003402 3.3e-09 65.1 84 44.0
MBI07_g11061_MAGBIO Magnolia biondii HOM05D003018 ORTHO05D003402 3.3e-09 65.1 81 45.7
Manes.05G197500 Manihot esculenta HOM05D003018 ORTHO05D003402 3.3e-09 65.1 81 45.7
Psat5g071120 Pisum sativum HOM05D003018 ORTHO05D003402 3.3e-09 65.1 84 42.9
Sc19g0000360 Simmondsia chinensis HOM05D003018 ORTHO05D003402 3.3e-09 65.1 81 44.4
HPP92_007053 Vanilla planifolia HOM05D003018 ORTHO05D003402 3.3e-09 65.1 81 45.7
Dinv17276 Davidia involucrata HOM05D003018 ORTHO05D003402 4.3e-09 64.7 84 41.7
ECA232G4756 Erigeron canadensis HOM05D003018 ORTHO05D003402 4.3e-09 64.7 84 45.2
RcHm_v2.0_Chr1g0383311 Rosa chinensis HOM05D003018 ORTHO05D003402 4.3e-09 64.7 81 45.7
Lj3C891T18 Lonicera japonica HOM05D003018 ORTHO05D003402 5.6e-09 64.3 74 47.3
Zm00001eb242440 Zea mays HOM05D003018 ORTHO05D003402 5.6e-09 64.3 81 45.7
Sabra15G0000400 Salix brachista HOM05D003018 ORTHO05D003402 7.3e-09 63.9 81 45.7
CDE02G1646 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 9.6e-09 63.5 81 44.4
HanXRQChr11g0346471 Helianthus annuus HOM05D003018 ORTHO05D003402 1.6e-08 62.8 76 50.0
Pp3c25_7060 Physcomitrium patens HOM05D003018 ORTHO05D003402 1.6e-08 62.8 84 48.8
Sed0009908 Sechium edule HOM05D003018 ORTHO05D003402 1.6e-08 62.8 80 45.0
CiPaw.06G038200 Carya illinoinensis HOM05D003018 ORTHO05D003402 2.1e-08 62.4 83 42.2
Ciclev10021773m.g Citrus clementina HOM05D003018 ORTHO05D003402 2.1e-08 62.4 74 45.9
Cc02_g00590 Coffea canephora HOM05D003018 ORTHO05D003402 2.1e-08 62.4 74 44.6
FvH4_7g33330 Fragaria vesca HOM05D003018 ORTHO05D003402 2.1e-08 62.4 74 45.9
TPR.G35918 Trifolium pratense HOM05D003018 ORTHO05D003402 2.1e-08 62.4 81 46.9
CDE06G0409 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 2.8e-08 62.0 81 44.4
Os04g0405100 Oryza sativa ssp. japonica HOM05D003018 ORTHO05D003402 2.8e-08 62.0 81 44.4
TWI39G0588 Tripterygium wilfordii HOM05D003018 ORTHO05D003402 2.8e-08 62.0 81 42.0
Zm00001eb181270 Zea mays HOM05D003018 ORTHO05D003402 2.8e-08 62.0 83 42.2
Lsat_1_v5_gn_0_9661 Lactuca sativa HOM05D003018 ORTHO05D003402 3.6e-08 61.6 84 41.7
Zm00001eb084410 Zea mays HOM05D003018 ORTHO05D003402 3.6e-08 61.6 85 43.5
FAN01G2324 Fragaria x ananassa HOM05D003018 ORTHO05D003402 4.8e-08 61.2 74 44.6
FAN03G3459 Fragaria x ananassa HOM05D003018 ORTHO05D003402 4.8e-08 61.2 74 44.6
FAN10G3922 Fragaria x ananassa HOM05D003018 ORTHO05D003402 1.8e-07 59.3 74 43.2
Lsat_1_v5_gn_2_3400 Lactuca sativa HOM05D003018 ORTHO05D003402 2.4e-07 58.9 76 42.1
CiPaw.05G208700 Carya illinoinensis HOM05D003018 ORTHO05D003402 3.1e-07 58.5 85 41.2
PSO675G3559 Papaver somniferum HOM05D003018 ORTHO05D003402 3.1e-07 58.5 74 41.9
AT5G24650 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 4.0e-07 58.2 84 40.5
FAN10G1538 Fragaria x ananassa HOM05D003018 ORTHO05D003402 4.0e-07 58.2 74 41.9
AL6G36250 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 5.3e-07 57.8 84 40.5
Carub.0006s2250 Capsella rubella HOM05D003018 ORTHO05D003402 5.3e-07 57.8 84 40.5
Haze_00335 Corylus avellana HOM05D003018 ORTHO05D003402 5.3e-07 57.8 93 39.8
Sed0018717 Sechium edule HOM05D003018 ORTHO05D003402 5.3e-07 57.8 74 41.9
AagrBONN_evm.TU.Sc2ySwM_344.126 Anthoceros agrestis HOM05D003018 ORTHO05D003402 9.0e-07 57.0 81 39.5
ECA248G0015 Erigeron canadensis HOM05D003018 ORTHO05D003402 9.0e-07 57.0 82 37.8
ECA248G1111 Erigeron canadensis HOM05D001208 ORTHO05D001593 9.0e-07 57.0 78 39.7
BcaNung01249 Brassica carinata HOM05D003018 ORTHO05D003402 1.2e-06 56.6 84 39.3
A06p35470 Brassica napus HOM05D003018 ORTHO05D003402 1.2e-06 56.6 51 52.9
BraA06t26470Z Brassica rapa HOM05D003018 ORTHO05D003402 1.2e-06 56.6 51 52.9
Sp2g22740 Schrenkiella parvula HOM05D003018 ORTHO05D003402 1.2e-06 56.6 84 40.5
BcaNung02005 Brassica carinata HOM05D003018 ORTHO05D003402 1.5e-06 56.2 84 39.3
C07p43070 Brassica napus HOM05D003018 ORTHO05D003402 1.5e-06 56.2 84 39.3
BolC7t44834H Brassica oleracea HOM05D003018 ORTHO05D003402 1.5e-06 56.2 84 39.3
Mapoly0083s0018 Marchantia polymorpha HOM05D003018 ORTHO05D003402 2.0e-06 55.8 77 42.9
BcaC07g39417 Brassica carinata HOM05D003018 ORTHO05D003402 4.4e-06 54.7 82 40.2
Thhalv10004788m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 4.4e-06 54.7 84 41.7
THA.LOC104798993 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 4.4e-06 54.7 60 48.3
Aa31LG4G18050 Aethionema arabicum HOM05D003018 ORTHO05D003402 7.6e-06 53.9 83 41.0
Ah.13g071050 Amaranthus hybridus HOM05D003018 ORTHO05D003402 7.6e-06 53.9 84 34.5
EL10Ac3g05130 Beta vulgaris HOM05D003018 ORTHO05D003402 7.6e-06 53.9 84 35.7
COL.COLO4_14400 Corchorus olitorius HOM05D003018 ORTHO05D003402 9.9e-06 53.5 99 36.4


User provided reference genes

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