Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 4.3e-192 674.5 334 100.0
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 2.1e-191 672.2 334 99.4
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.3e-135 486.9 326 74.5
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.8e-134 483.0 331 75.2
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 5.3e-134 481.5 263 85.9
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.4e-133 478.8 330 73.6
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 5.8e-133 478.0 329 72.6
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 2.2e-132 476.1 330 73.0
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 2.9e-132 475.7 327 73.7
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 6.5e-132 474.6 325 74.2
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 6.5e-132 474.6 336 73.8
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 9.3e-131 470.7 330 72.4
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 3.5e-130 468.8 329 73.9
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 3.5e-130 468.8 332 72.6
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.0e-129 467.2 326 73.6
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.3e-129 466.8 334 70.7
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.3e-129 466.8 327 71.9
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.8e-129 466.5 334 71.6
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 2.3e-129 466.1 329 71.7
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 3.0e-129 465.7 334 71.3
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.1e-128 463.8 340 70.0
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.5e-128 463.4 331 71.0
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.9e-128 463.0 333 70.3
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.3e-128 462.2 332 71.1
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 5.7e-128 461.5 327 71.6
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.7e-128 461.5 331 70.7
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.7e-128 461.5 331 70.7
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.7e-128 461.5 331 70.4
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 5.7e-128 461.5 327 70.3
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.3e-127 460.3 341 69.5
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.6e-127 459.9 339 69.3
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 8.2e-127 457.6 334 69.5
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.1e-126 457.2 325 71.4
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 1.1e-126 457.2 328 70.7
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 4.1e-126 455.3 333 69.7
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.1e-126 455.3 334 69.2
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 5.3e-126 454.9 327 70.9
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 5.3e-126 454.9 337 69.1
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 6.9e-126 454.5 331 69.2
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.5e-125 453.4 335 69.0
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.5e-125 453.4 326 70.6
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.4e-125 452.2 325 71.1
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 4.5e-125 451.8 296 75.3
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 4.5e-125 451.8 326 69.9
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 4.5e-125 451.8 322 71.7
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 1.3e-124 450.3 327 69.1
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.3e-124 450.3 331 67.7
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.7e-124 449.9 327 69.7
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 1.7e-124 449.9 260 81.9
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 2.2e-124 449.5 345 67.0
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 2.9e-124 449.1 327 69.4
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 2.9e-124 449.1 333 70.9
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 5.0e-124 448.4 266 81.2
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 5.0e-124 448.4 325 70.5
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 8.5e-124 447.6 263 80.6
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 1.1e-123 447.2 327 69.4
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 1.9e-123 446.4 338 67.2
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 3.2e-123 445.7 332 67.5
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 4.2e-123 445.3 330 68.8
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 4.2e-123 445.3 328 69.2
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 4.2e-123 445.3 267 79.8
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 4.2e-123 445.3 267 79.8
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 5.5e-123 444.9 326 69.3
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 5.5e-123 444.9 266 81.2
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 7.2e-123 444.5 294 73.5
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.2e-123 444.5 294 74.8
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 7.2e-123 444.5 329 68.1
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 9.4e-123 444.1 263 79.8
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.2e-122 443.7 299 74.6
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.2e-122 443.7 333 67.9
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.6e-122 443.4 329 67.8
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 2.1e-122 443.0 325 69.8
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 2.7e-122 442.6 329 67.5
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 2.7e-122 442.6 329 67.5
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.7e-122 442.6 294 74.8
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.7e-122 442.6 336 68.2
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 4.6e-122 441.8 326 67.8
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 4.6e-122 441.8 338 66.6
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 6.1e-122 441.4 329 67.2
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 7.9e-122 441.0 266 79.7
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 1.0e-121 440.7 325 69.5
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.0e-121 440.7 327 68.5
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.8e-121 439.9 329 67.2
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.3e-121 439.5 325 69.2
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 2.3e-121 439.5 270 76.7
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.9e-121 438.7 325 69.2
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 3.9e-121 438.7 326 68.4
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 3.9e-121 438.7 270 76.7
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 5.1e-121 438.3 235 86.0
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 5.1e-121 438.3 270 76.3
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 6.7e-121 438.0 325 68.9
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 6.7e-121 438.0 262 79.4
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 6.7e-121 438.0 326 67.8
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 8.8e-121 437.6 325 68.9
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 8.8e-121 437.6 325 68.9
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.5e-120 436.8 325 70.5
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 1.5e-120 436.8 325 68.9
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 2.0e-120 436.4 295 74.9
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 4.3e-120 435.3 304 70.7
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.4e-120 434.5 264 79.2
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 7.4e-120 434.5 327 70.3
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 9.7e-120 434.1 329 67.8
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.3e-119 433.7 263 78.7
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.3e-119 433.7 325 68.0
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.7e-119 433.3 325 68.0
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 2.8e-119 432.6 291 73.5
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.8e-118 429.9 328 67.4
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 2.4e-118 429.5 327 67.6
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 5.3e-118 428.3 333 66.4
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 6.9e-118 427.9 236 84.7
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-117 427.2 264 77.3
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.5e-117 426.8 331 66.8
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 2.0e-117 426.4 327 67.0
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.5e-117 425.2 302 70.2
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 5.9e-117 424.9 325 66.8
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.8e-116 422.2 230 85.7
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.9e-115 419.9 262 76.7
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.4e-113 413.7 326 63.2
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 3.7e-111 405.6 271 70.8
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 6.3e-111 404.8 231 83.5
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.4e-110 402.9 330 63.3
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 2.0e-109 399.8 219 82.6
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.6e-109 399.4 214 85.0
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 4.5e-109 398.7 324 62.3
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.0e-108 395.2 329 62.6
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 6.5e-108 394.8 217 83.4
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.2e-106 390.6 218 82.1
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.4e-105 387.1 215 80.9
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 3.0e-105 386.0 225 80.4
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 7.5e-104 381.3 266 69.2
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 5.9e-101 371.7 208 82.2
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.5e-99 367.1 217 77.0
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.8e-94 350.1 323 56.3
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 3.4e-88 329.3 327 52.9
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 4.9e-87 325.5 296 60.8
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 7.7e-85 318.2 250 69.6
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 8.9e-81 304.7 233 63.1
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.5e-75 286.6 162 80.9
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 2.1e-74 283.5 152 84.9
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 2.4e-70 270.0 247 60.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 1.5e-67 260.8 216 63.0
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 9.5e-67 258.1 219 65.3
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.1e-62 244.6 206 64.1
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-60 237.7 210 61.4
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 2.8e-58 229.9 155 71.6
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 2.9e-55 219.9 129 78.3
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.7e-52 210.7 147 69.4
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 3.8e-31 139.8 180 48.9
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 6.1e-13 79.3 49 73.5
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 7.9e-13 79.0 85 56.5
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 3.9e-12 76.6 110 48.2
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 3.4e-08 63.5 111 45.0


User provided reference genes

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