Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 4094.3 2266 100.0
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 3750.3 2293 91.3
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 2694.8 2555 65.5
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 2577.0 2552 63.4
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1855.1 2551 51.2
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1734.9 2539 48.6
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1727.2 2549 48.3
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1657.1 2438 48.7
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1625.5 2549 47.1
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1616.3 2292 49.6
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1515.7 2544 45.9
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 1514.6 2568 45.6
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 1511.9 2586 44.9
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 1506.5 2560 44.6
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1476.1 2550 43.8
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1454.5 2602 43.5
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1453.0 2559 43.1
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1435.6 2554 43.3
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1430.6 2556 42.4
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1428.7 2537 44.0
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1428.7 2581 43.2
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1422.9 2367 45.6
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1420.2 2564 43.5
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1419.8 2561 42.6
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1409.0 2560 42.4
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1398.3 2531 43.1
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1396.3 2560 42.3
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1393.6 2540 43.2
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1386.3 2555 42.7
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1382.9 2535 42.7
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1382.9 2524 43.7
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1345.5 2543 42.5
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1342.8 2603 41.4
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1331.2 2615 41.5
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1330.5 2529 42.3
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1322.8 2550 41.2
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1321.2 2523 41.7
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1318.1 2615 41.0
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1317.8 2609 41.1
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1315.1 2509 41.8
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1308.5 2549 40.8
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1307.4 2553 40.5
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1304.7 2527 42.1
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1301.2 2540 42.2
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1300.0 2550 40.8
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1290.0 2541 41.1
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1285.0 2475 42.6
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1284.2 2553 41.2
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1279.2 2180 45.4
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1278.1 2573 41.1
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1277.3 2542 41.8
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1272.7 2538 41.5
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1263.8 2498 42.4
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1263.4 2488 41.6
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1236.1 2561 39.9
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1234.2 2527 40.9
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1232.6 2501 40.8
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1226.5 2517 40.8
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1213.4 2516 40.9
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1211.8 2543 40.1
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1203.0 2525 39.8
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1202.2 2512 39.6
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1201.4 2542 40.3
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1193.3 2061 44.5
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1172.1 2680 38.5
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1161.0 2551 39.5
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1157.9 2519 39.3
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1156.7 2564 38.8
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1153.7 2530 39.2
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1145.2 2527 38.3
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1143.3 2411 39.9
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1142.1 2577 39.3
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1134.4 2537 38.6
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1127.1 2497 39.7
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1125.5 2593 37.4
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1123.6 2510 39.2
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1113.2 2525 38.4
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1109.7 2500 38.5
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1105.5 2463 38.2
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1101.7 2474 37.6
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1095.9 2604 39.1
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1079.3 1297 54.7
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 4.7e-311 1072.4 2514 38.4
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 8.4e-308 1061.6 2418 37.2
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 3.0e-305 1053.1 2513 37.6
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 2.0e-301 1040.4 2515 37.3
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 7.1e-299 1031.9 2476 37.6
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 5.3e-286 989.2 2483 38.7
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 3.6e-282 976.5 2524 38.0
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 2.8e-279 966.8 2394 37.6
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 2.9e-276 956.8 2537 36.6
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 2.6e-272 943.7 2473 38.6
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 5.2e-265 919.5 2353 36.8
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 2.2e-252 877.5 1902 38.4
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 8.3e-247 859.0 2258 36.0
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 7.2e-243 845.9 2494 35.4
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 1.8e-233 814.7 2507 35.0
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 7.8e-229 799.3 2236 35.2
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 5.0e-228 796.6 2239 35.8
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 6.6e-220 769.6 2698 33.8
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 4.3e-219 766.9 984 51.4
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 2.4e-209 734.6 2423 34.1
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 5.2e-209 733.4 2499 33.3
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 3.9e-188 664.1 2159 33.3
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 2.2e-183 648.3 1760 36.9
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 2.5e-179 634.8 1700 36.2
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.6e-178 632.1 746 55.0
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.4e-169 602.4 2582 30.7
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.2e-159 568.5 818 50.4
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 3.1e-145 521.5 1469 33.6
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 6.1e-141 507.3 2179 30.6
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 5.2e-140 504.2 1911 33.0
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 2.6e-139 501.9 592 57.6
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.2e-132 477.6 864 44.0
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 9.8e-131 473.4 2159 30.4
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 9.8e-131 473.4 2159 30.4
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 2.2e-130 472.2 1066 38.4
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 5.4e-129 467.6 2187 30.2
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.7e-127 462.6 2196 30.0
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 5.6e-126 457.6 788 42.4
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 7.2e-126 457.2 2194 30.1
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 2.7e-112 412.1 476 51.5
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.7e-104 385.6 1239 32.4
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 7.6e-99 367.5 1033 35.9
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 1.3e-98 366.7 960 34.4
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 1.1e-89 337.0 518 45.9
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.6e-88 333.2 692 41.3
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.7e-87 329.7 2910 26.6
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.4e-67 262.3 2811 26.7
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 3.5e-64 252.3 301 49.5
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.6e-61 243.4 1789 27.1
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 8.5e-58 231.1 822 36.6
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.4e-57 230.3 2265 27.9
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.9e-57 229.9 2598 26.6
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.9e-50 206.1 2569 26.4
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 1.1e-49 204.1 336 41.4
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 3.3e-46 192.6 1418 27.4
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.4e-44 187.2 259 49.0
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 1.2e-43 184.1 259 48.6
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 1.3e-34 154.1 581 32.7
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 1.6e-27 130.6 337 32.6
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 4.5e-27 129.0 1018 27.0
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 2.9e-26 126.3 255 41.6
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.5e-25 122.1 300 35.0
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 9.4e-25 121.3 430 29.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.8e-21 109.0 164 46.3
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 4.1e-20 105.9 211 40.3
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.0e-18 101.3 258 38.4
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 2.8e-16 93.2 1227 26.1
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 7.0e-12 78.6 113 47.8
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.5e-11 76.3 226 31.0
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 3.5e-11 76.3 78 50.0
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 1.0e-10 74.7 75 61.3
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 2.9e-10 73.2 71 52.1
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.1e-09 71.2 149 40.9
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 1.1e-09 71.2 50 74.0


User provided reference genes

Program Settings