Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1738.0 855 100.0
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1700.6 856 98.0
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1323.5 869 75.4
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1302.7 865 75.7
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1283.5 908 72.0
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1260.4 879 72.7
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1252.7 859 73.7
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1252.7 850 73.8
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1250.7 867 72.8
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1245.3 872 71.6
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1242.3 885 71.2
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1240.7 885 70.6
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1238.4 872 71.3
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1235.7 866 72.1
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1229.9 887 70.5
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1224.5 864 71.6
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1222.2 870 70.7
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1219.1 851 72.2
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1213.7 835 73.5
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1209.5 864 71.1
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1208.0 859 69.6
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1207.6 865 71.1
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1206.8 876 69.7
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1202.6 857 70.8
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1199.5 859 69.7
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1199.1 868 69.7
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1198.3 865 70.3
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1197.2 865 70.3
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1195.6 907 67.6
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1192.6 865 70.2
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1177.9 858 71.6
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1171.8 853 69.1
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1160.6 884 66.5
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1157.9 856 68.7
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1155.6 866 67.6
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1154.8 841 69.6
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1154.8 884 68.6
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1152.9 841 69.4
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1148.7 872 67.3
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1146.0 841 69.1
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1145.6 888 66.9
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1144.8 888 67.0
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1142.5 852 67.8
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1135.9 878 66.2
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1133.2 854 67.8
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1132.5 860 67.3
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1129.8 854 67.9
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1128.6 879 65.9
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 0.0e+00 1128.2 871 66.9
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1128.2 860 67.3
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1125.2 832 68.9
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1119.0 846 67.5
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1117.4 877 65.8
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1117.1 1004 60.3
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1113.2 878 66.1
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1108.6 878 65.3
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1101.7 869 65.9
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1101.3 831 67.7
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1096.6 794 70.2
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1086.6 875 66.1
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1081.2 867 64.7
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1078.5 941 61.3
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1077.0 813 67.3
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 1.8e-311 1072.4 874 63.6
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 1.8e-311 1072.4 817 67.2
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.2e-310 1069.7 867 64.1
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 4.4e-310 1067.8 865 64.2
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 7.1e-308 1060.4 848 64.2
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 1.2e-307 1059.7 844 64.7
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 4.6e-307 1057.7 840 65.2
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 6.0e-307 1057.4 948 60.2
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 3.0e-306 1055.0 845 64.1
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 2.4e-300 1035.4 852 64.4
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 7.8e-299 1030.4 828 64.3
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 1.3e-298 1029.6 840 63.5
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.4e-287 993.0 857 61.7
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 2.4e-287 992.3 843 61.0
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 4.0e-287 991.5 831 61.1
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 9.9e-286 986.9 840 60.7
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 6.4e-285 984.2 846 60.5
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 8.4e-285 983.8 839 60.2
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 8.4e-285 983.8 865 60.0
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 3.1e-279 965.3 861 59.5
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 7.9e-275 950.7 845 59.5
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 7.9e-275 950.7 845 59.5
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 1.1e-273 946.8 847 59.9
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 4.8e-272 941.4 845 59.6
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 8.2e-272 940.6 845 59.5
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 4.5e-270 934.9 833 59.8
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.4e-268 929.9 854 58.7
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 9.7e-265 917.1 845 58.2
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 2.4e-263 912.5 761 63.1
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 6.9e-263 911.0 869 57.1
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 3.6e-243 845.5 776 58.4
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.4e-231 807.0 721 60.7
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 7.0e-231 804.7 774 59.2
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 3.3e-204 716.1 882 48.8
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.8e-203 713.0 898 46.9
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.0e-197 693.0 905 44.8
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.7e-195 685.6 526 69.2
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 9.3e-183 644.8 399 79.9
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 1.1e-175 621.3 604 55.1
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.3e-171 607.8 843 41.9
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 8.1e-171 605.1 369 79.4
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 7.9e-166 588.6 407 72.7
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.0e-144 518.5 411 65.2
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 8.5e-144 515.4 390 69.7
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 4.2e-143 513.1 477 60.6
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 3.7e-123 446.8 498 52.8
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.5e-119 434.9 274 77.0
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.9e-101 372.5 549 43.0
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.9e-101 372.5 549 43.0
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 2.7e-97 360.9 352 54.8
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 4.7e-86 323.6 281 59.4
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.4e-82 312.0 175 85.7
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 7.3e-79 299.7 371 49.3
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.6e-76 291.2 151 91.4
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 7.6e-76 289.7 843 30.0
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 8.6e-72 276.2 283 56.5
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 7.8e-65 253.1 137 88.3
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.3e-63 247.7 145 84.1
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.4e-58 231.5 137 79.6
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.4e-52 211.1 117 77.8
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.3e-48 198.4 293 40.3
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.6e-46 192.2 320 35.6
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 3.1e-37 161.4 186 52.7
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 2.0e-28 132.1 208 36.1
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 3.0e-24 118.2 67 85.1
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 1.1e-23 116.3 129 48.1
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 2.8e-22 111.7 162 41.4
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 1.6e-17 95.9 257 28.0
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 2.0e-15 89.0 55 69.1
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.7e-15 87.4 58 72.4
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 1.7e-14 85.9 129 39.5
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.3e-14 84.0 55 72.7
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.3e-14 84.0 55 72.7
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.3e-14 84.0 55 72.7
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.3e-14 84.0 55 72.7
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.3e-14 84.0 55 72.7
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.3e-14 84.0 55 72.7
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.3e-14 84.0 55 72.7
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.3e-14 84.0 55 72.7
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.3e-14 84.0 55 72.7
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.3e-14 84.0 55 72.7
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.2e-14 83.6 55 72.7
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 3.5e-12 78.2 58 65.5
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 5.9e-12 77.4 118 39.8
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 2.2e-11 75.5 55 67.3
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.1e-10 73.2 33 93.9
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 9.7e-07 60.1 90 37.8


User provided reference genes

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