Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-80 303.1 157 100.0
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 2.5e-62 242.3 139 92.1
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 2.5e-62 242.3 139 92.1
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.9e-50 202.2 139 79.1
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 3.8e-50 201.8 139 76.3
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 3.8e-50 201.8 149 73.2
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 5.0e-50 201.4 140 77.1
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 5.0e-50 201.4 139 77.0
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 6.5e-50 201.1 139 77.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 8.5e-50 200.7 139 78.4
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 8.5e-50 200.7 139 76.3
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.4e-49 199.9 143 74.8
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.9e-49 199.5 139 78.4
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 4.2e-49 198.4 139 74.1
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 7.2e-49 197.6 139 74.8
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 7.2e-49 197.6 139 74.8
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 9.4e-49 197.2 139 76.3
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.2e-48 196.8 148 75.0
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.2e-48 196.8 139 75.5
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.2e-48 196.8 144 72.9
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.6e-48 196.4 140 74.3
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.1e-48 196.1 139 74.1
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.1e-48 196.1 139 74.1
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 2.7e-48 195.7 143 74.1
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.7e-48 195.7 139 76.3
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.7e-48 195.7 139 76.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 2.7e-48 195.7 139 74.1
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.6e-48 195.3 139 75.5
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 6.1e-48 194.5 139 75.5
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 7.9e-48 194.1 140 73.6
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 7.9e-48 194.1 139 75.5
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.0e-47 193.7 139 74.8
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.0e-47 193.7 147 72.8
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.0e-47 193.7 139 74.8
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.8e-47 193.0 139 74.1
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.3e-47 192.6 140 75.0
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.3e-47 192.6 140 74.3
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 3.0e-47 192.2 141 73.8
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 3.9e-47 191.8 139 74.8
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 5.1e-47 191.4 139 74.1
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 5.1e-47 191.4 139 74.8
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 6.7e-47 191.0 140 72.1
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.1e-46 190.3 139 74.1
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.1e-46 190.3 143 71.3
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.5e-46 189.9 139 71.9
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.5e-46 189.9 139 73.4
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.6e-46 189.1 165 66.1
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.3e-46 188.7 139 73.4
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 5.7e-46 188.0 126 84.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 7.4e-46 187.6 140 72.1
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 9.7e-46 187.2 113 88.5
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 2.2e-45 186.0 139 71.2
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 3.7e-45 185.3 138 71.7
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 6.3e-45 184.5 138 70.3
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 8.2e-45 184.1 139 71.2
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.1e-44 183.7 140 70.0
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.1e-44 183.7 141 70.2
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-44 183.7 139 69.8
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.1e-44 183.7 138 71.0
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.1e-44 183.7 139 71.2
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.1e-44 183.7 139 69.1
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.4e-44 183.3 139 71.2
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.4e-44 183.3 140 69.3
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.4e-44 183.3 139 73.4
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 2.4e-44 182.6 138 71.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.4e-44 182.6 142 69.7
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.4e-44 182.6 138 71.7
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.1e-44 182.2 140 70.0
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 3.1e-44 182.2 139 70.5
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 3.1e-44 182.2 140 70.0
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.1e-44 181.8 143 69.2
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 6.9e-44 181.0 139 69.8
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 6.9e-44 181.0 148 65.5
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 6.9e-44 181.0 140 69.3
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 9.1e-44 180.6 138 71.0
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.1e-44 180.6 139 69.1
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 9.1e-44 180.6 143 68.5
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.2e-43 180.3 139 69.8
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.2e-43 180.3 141 68.8
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.2e-43 180.3 138 70.3
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.5e-43 179.9 140 68.6
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.5e-43 179.9 149 67.1
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.5e-43 179.9 139 71.9
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 2.0e-43 179.5 153 66.7
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.0e-43 179.5 141 68.1
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 2.6e-43 179.1 160 63.8
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 4.5e-43 178.3 139 71.2
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 5.9e-43 177.9 140 69.3
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 7.7e-43 177.6 141 68.1
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 7.7e-43 177.6 138 70.3
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-42 176.8 139 69.1
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 5.0e-42 174.9 151 63.6
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 5.0e-42 174.9 151 63.6
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.1e-41 173.7 139 66.9
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 5.5e-41 171.4 140 66.4
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-40 170.2 141 67.4
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-40 170.2 144 66.0
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.1e-40 167.9 144 64.6
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.8e-39 166.4 146 64.4
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 3.9e-39 165.2 148 64.2
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 3.9e-39 165.2 175 56.0
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.2e-39 164.9 137 63.5
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 6.7e-39 164.5 152 60.5
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 6.7e-39 164.5 115 76.5
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 6.7e-39 164.5 116 79.3
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.1e-38 163.7 139 64.7
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.5e-38 163.3 155 59.4
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-38 163.3 155 59.4
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 9.7e-38 160.6 176 52.8
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 2.8e-37 159.1 135 63.0
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 9.1e-36 154.1 168 53.6
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.0e-35 152.9 137 62.0
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.9e-35 151.4 167 50.9
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.0e-34 150.6 135 61.5
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.3e-34 150.2 139 58.3
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 8.5e-34 147.5 114 71.1
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 2.5e-33 146.0 139 62.6
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 9.4e-33 144.1 139 58.3
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.6e-32 143.3 116 69.8
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 5.2e-31 138.3 99 76.8
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 2.6e-30 136.0 115 67.8
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 9.7e-30 134.0 135 56.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.8e-29 132.5 137 53.3
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 8.2e-29 131.0 167 50.9
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.8e-28 129.8 135 56.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 3.1e-28 129.0 131 58.0
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 2.0e-27 126.3 155 51.0
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 5.9e-27 124.8 109 63.3
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.1e-25 120.6 119 58.8
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.5e-25 120.2 137 51.8
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 4.7e-24 115.2 112 59.8
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 3.0e-23 112.5 115 58.3
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.5e-22 110.2 85 70.6
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 7.5e-22 107.8 144 43.1
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 9.8e-22 107.5 85 69.4
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 3.7e-21 105.5 138 47.1
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.4e-20 103.6 81 69.1
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.8e-20 103.2 80 68.8
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.1e-20 102.4 80 68.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.0e-18 97.4 80 65.0
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-18 97.1 70 74.3
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.3e-18 96.3 77 67.5
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.9e-18 95.9 59 79.7
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.0e-18 95.1 76 69.7
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.5e-17 93.6 85 61.2
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 3.6e-16 89.0 69 63.8
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 3.6e-16 89.0 69 66.7
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.7e-13 80.1 85 56.5
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.7e-13 79.0 69 63.8
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.3e-13 78.2 57 71.9
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 2.0e-11 73.2 132 37.1
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 4.5e-11 72.0 101 47.5
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 6.6e-10 68.2 46 73.9
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.9e-09 66.6 72 52.8
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.9e-09 66.6 72 52.8
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 3.0e-07 59.3 42 66.7
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 3.0e-07 59.3 42 66.7


User provided reference genes

Program Settings