Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 1.9e-156 555.8 295 100.0
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 7.2e-151 537.3 295 97.3
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.3e-128 463.4 295 84.7
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.4e-125 453.4 296 82.8
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.3e-96 357.1 294 68.7
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 6.8e-93 344.7 295 66.4
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 5.8e-92 341.7 294 65.0
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 7.5e-92 341.3 295 65.1
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 1.1e-90 337.4 293 63.1
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.2e-90 335.9 293 63.5
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 3.2e-90 335.9 293 64.8
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 5.4e-90 335.1 293 64.2
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.2e-89 334.0 293 63.8
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.6e-89 333.6 293 62.8
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 2.1e-89 333.2 293 62.8
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 3.5e-89 332.4 296 64.2
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 6.0e-89 331.6 294 63.9
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.0e-88 330.9 281 64.4
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 2.3e-88 329.7 295 62.7
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 5.1e-88 328.6 293 62.8
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 6.6e-88 328.2 294 62.6
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.5e-87 327.0 293 63.5
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.5e-87 326.2 293 63.5
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.3e-87 325.9 293 63.1
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.3e-87 325.5 293 63.1
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 7.3e-87 324.7 293 63.1
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 7.3e-87 324.7 292 63.0
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 4.7e-86 322.0 296 62.8
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 8.9e-85 317.8 293 60.4
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 8.9e-85 317.8 292 62.3
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.5e-84 317.0 293 61.4
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.6e-84 316.2 295 63.1
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 7.6e-84 314.7 295 61.0
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.3e-83 313.9 295 61.0
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 2.2e-83 313.2 294 61.6
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 2.9e-83 312.8 253 67.6
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 2.9e-83 312.8 294 61.2
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 6.4e-83 311.6 300 61.7
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 6.4e-83 311.6 294 59.9
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 3.2e-82 309.3 299 59.9
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 9.2e-82 307.8 293 60.8
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 1.6e-81 307.0 294 60.2
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 2.1e-81 306.6 298 60.7
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 2.1e-81 306.6 294 60.2
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 2.1e-81 306.6 301 60.1
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 2.7e-81 306.2 294 60.9
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 3.5e-81 305.8 293 59.0
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.0e-80 304.3 252 66.7
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 1.3e-80 303.9 253 66.4
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 2.3e-80 303.1 302 57.9
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 3.0e-80 302.8 297 58.9
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.5e-79 300.4 269 63.9
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.3e-79 299.3 328 54.9
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 5.6e-79 298.5 259 66.0
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 7.3e-79 298.1 278 62.6
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 9.6e-79 297.7 293 60.1
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 2.8e-78 296.2 312 56.7
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 4.7e-78 295.4 300 59.0
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 4.7e-78 295.4 303 56.1
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 4.7e-78 295.4 296 59.1
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 1.1e-77 294.3 326 55.5
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.1e-77 294.3 273 61.5
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.1e-77 294.3 296 56.8
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.4e-77 293.9 296 59.5
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.8e-77 293.5 295 59.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 2.4e-77 293.1 260 62.7
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 3.1e-77 292.7 295 57.3
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 4.0e-77 292.4 296 59.1
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 4.0e-77 292.4 296 58.8
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 6.9e-77 291.6 296 58.4
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 9.0e-77 291.2 297 59.3
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 9.0e-77 291.2 297 59.3
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 1.2e-76 290.8 294 57.5
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 2.0e-76 290.0 262 63.0
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 3.4e-76 289.3 293 58.4
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 9.9e-76 287.7 309 56.0
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.7e-75 287.0 295 58.3
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 1.7e-75 287.0 295 58.0
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 2.2e-75 286.6 301 57.1
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 2.9e-75 286.2 298 59.1
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 6.4e-75 285.0 295 58.3
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 6.4e-75 285.0 298 58.7
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 6.4e-75 285.0 298 58.7
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 4.2e-74 282.3 301 57.5
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 1.6e-73 280.4 293 56.3
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.1e-73 280.0 296 59.5
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 3.5e-73 279.3 294 56.5
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 6.0e-73 278.5 358 48.9
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 8.7e-72 274.6 319 51.7
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 4.3e-71 272.3 309 55.7
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 5.6e-71 271.9 212 69.3
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 3.1e-69 266.2 293 53.6
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 4.0e-69 265.8 303 56.1
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 1.5e-68 263.8 296 54.4
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 4.5e-68 262.3 275 56.0
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 2.2e-67 260.0 305 53.8
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.9e-66 256.9 387 45.0
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 2.4e-66 256.5 384 44.8
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 5.4e-66 255.4 283 53.4
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 7.1e-66 255.0 251 56.6
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 2.1e-65 253.4 360 46.9
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 1.8e-61 240.4 299 51.5
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.2e-60 237.7 198 66.7
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 7.6e-60 235.0 221 60.6
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 7.6e-60 235.0 297 50.5
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 1.9e-58 230.3 237 58.2
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 4.2e-58 229.2 183 68.9
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.2e-57 227.6 214 63.1
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 3.9e-56 222.6 282 50.4
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.3e-54 217.6 299 49.8
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 3.0e-48 196.4 235 46.8
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 3.0e-48 196.4 311 46.6
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 5.1e-48 195.7 235 46.8
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.1e-47 194.5 173 63.0
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 3.1e-45 186.4 244 45.5
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 9.0e-45 184.9 276 44.9
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 3.8e-43 179.5 184 59.2
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.1e-41 173.7 230 42.6
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 6.1e-41 172.2 232 43.1
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.5e-39 166.8 147 63.3
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 1.7e-38 164.1 182 55.5
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 9.1e-37 158.3 162 56.8
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.6e-33 147.5 229 39.7
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.1e-31 141.4 180 50.6
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.0e-31 140.6 239 38.5
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 4.1e-29 132.9 173 46.8
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 7.7e-28 128.6 119 58.0
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 3.6e-25 119.8 82 78.0
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 4.7e-25 119.4 121 58.7
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 1.0e-24 118.2 174 44.8
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 1.7e-22 110.9 116 54.3
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 2.9e-19 100.1 105 55.2
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 2.9e-19 100.1 105 55.2
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 4.2e-18 96.3 105 53.3
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 4.0e-16 89.7 129 44.2
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.2e-15 88.2 98 46.9
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 4.1e-13 79.7 71 59.2
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 3.2e-10 70.1 182 26.4
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 3.6e-09 66.6 60 58.3
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 3.6e-09 66.6 60 58.3
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 3.6e-09 66.6 60 58.3
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 3.6e-09 66.6 60 58.3
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 2.0e-07 60.8 186 31.7
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 1.7e-06 57.8 191 27.7


User provided reference genes

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