Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 4.9e-238 827.4 418 100.0
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 9.5e-149 530.8 410 66.8
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 2.4e-144 516.2 419 65.6
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 5.4e-144 515.0 411 66.2
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 8.6e-142 507.7 469 58.8
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.1e-141 507.3 405 64.9
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.9e-141 506.5 408 65.2
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.2e-140 503.8 405 64.9
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 3.4e-138 495.7 407 63.4
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 4.4e-138 495.4 413 63.2
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 4.9e-137 491.9 406 63.5
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 8.4e-137 491.1 410 63.7
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 8.4e-137 491.1 415 63.6
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 5.4e-136 488.4 408 63.2
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.2e-135 487.3 402 64.2
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.0e-134 484.2 402 64.2
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 5.1e-134 481.9 409 64.1
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.5e-133 480.3 402 63.7
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 3.3e-133 479.2 409 62.6
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 3.1e-131 472.6 402 62.7
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 4.0e-131 472.2 407 63.6
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 5.2e-131 471.9 404 61.9
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 6.9e-131 471.5 408 62.7
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 1.7e-129 466.8 406 61.8
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 8.4e-129 464.5 411 60.1
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.4e-128 463.8 409 60.9
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.2e-128 462.6 401 62.1
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 3.2e-128 462.6 412 60.7
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 5.4e-128 461.8 416 58.9
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 4.6e-127 458.8 416 60.3
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 2.3e-126 456.4 414 58.2
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 5.1e-126 455.3 409 58.4
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 5.1e-126 455.3 409 59.9
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 8.7e-126 454.5 457 57.1
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.1e-125 454.1 407 60.2
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 3.3e-125 452.6 409 59.7
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 3.3e-125 452.6 407 60.0
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 5.6e-125 451.8 407 60.7
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 2.1e-124 449.9 415 58.8
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 2.1e-124 449.9 413 57.4
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 2.1e-124 449.9 427 56.9
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 2.8e-124 449.5 409 58.9
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.8e-124 449.5 413 57.4
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.1e-123 447.6 417 58.0
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.8e-123 446.8 407 60.0
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.1e-123 446.0 413 57.1
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.3e-123 445.3 413 56.4
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.3e-123 445.3 413 56.4
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 6.9e-123 444.9 413 57.1
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 6.9e-123 444.9 415 58.1
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 2.0e-122 443.4 417 55.9
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 3.4e-122 442.6 402 60.0
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 4.5e-122 442.2 410 58.5
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 4.5e-122 442.2 402 59.5
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 9.9e-122 441.0 402 59.2
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.1e-120 437.6 402 59.2
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.1e-120 437.6 414 57.0
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 1.4e-120 437.2 407 59.5
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.9e-120 436.8 412 57.8
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 3.2e-120 436.0 409 56.2
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 4.2e-120 435.6 405 58.5
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 4.2e-120 435.6 402 59.0
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.6e-119 433.7 402 58.2
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 2.1e-119 433.3 409 57.5
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 4.6e-119 432.2 409 57.7
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-118 430.6 434 56.2
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.3e-118 430.6 411 58.4
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.8e-118 430.3 401 56.4
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 3.0e-118 429.5 403 56.8
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.1e-118 428.7 405 57.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 5.1e-118 428.7 406 56.9
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 5.1e-118 428.7 405 58.5
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.3e-117 426.0 418 55.3
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.4e-117 424.9 403 56.3
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 7.4e-117 424.9 473 52.9
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.1e-116 423.3 406 56.4
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 2.1e-116 423.3 382 61.3
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 8.1e-116 421.4 402 56.5
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.4e-115 420.6 410 56.1
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 1.4e-115 420.6 402 56.0
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 3.1e-115 419.5 403 56.1
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 3.1e-115 419.5 405 56.5
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 4.0e-115 419.1 413 57.6
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 5.3e-115 418.7 416 54.6
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.5e-114 417.2 414 54.6
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 4.9e-113 412.1 426 56.8
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 4.6e-111 405.6 411 55.2
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.0e-110 404.4 408 53.9
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 1.3e-110 404.1 417 52.8
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.6e-108 397.1 400 55.2
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 3.7e-108 396.0 411 53.0
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 6.9e-107 391.7 407 54.5
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 9.0e-107 391.3 383 56.7
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 2.6e-106 389.8 410 55.4
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 4.5e-106 389.0 392 55.9
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 4.5e-106 389.0 435 51.0
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.3e-105 387.5 473 48.6
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 1.6e-103 380.6 404 51.5
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 5.1e-102 375.6 392 53.6
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 6.7e-102 375.2 392 54.3
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.9e-101 373.6 392 54.6
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 9.0e-99 364.8 409 50.6
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 7.6e-98 361.7 393 54.2
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 1.4e-96 357.5 296 60.5
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.3e-94 350.9 304 60.2
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.5e-93 347.4 403 47.1
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.7e-92 342.8 329 59.0
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 5.9e-90 335.5 399 47.9
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.0e-86 323.2 271 59.8
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.0e-85 320.5 426 45.3
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 7.4e-85 318.5 410 47.3
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 4.8e-84 315.8 347 51.9
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.4e-80 304.3 414 44.9
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 9.4e-80 301.6 414 46.1
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.6e-79 300.8 452 41.2
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 2.1e-79 300.4 478 39.3
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.1e-79 300.4 381 47.8
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.5e-72 277.7 371 48.8
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 3.2e-72 276.6 407 42.8
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 5.5e-72 275.8 252 63.5
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 4.4e-69 266.2 278 47.8
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 5.9e-58 229.2 166 60.2
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.0e-57 228.4 304 45.7
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 2.1e-55 220.7 184 60.9
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 3.6e-55 219.9 228 57.5
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.4e-46 191.4 174 54.0
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 1.5e-45 188.0 155 57.4
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.2e-44 184.1 171 53.2
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 8.6e-41 172.2 110 71.8
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 5.4e-35 152.9 266 36.5
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.2e-34 151.8 202 49.0
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 2.0e-29 134.4 178 46.6
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 2.6e-29 134.0 94 67.0
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 8.3e-28 129.0 114 58.8
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 6.8e-22 109.4 188 41.5
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-19 101.7 151 37.7
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 3.6e-15 87.0 142 40.1
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.1e-14 85.5 123 43.9
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 4.4e-13 80.1 51 76.5
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 1.7e-12 78.2 52 71.2
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.7e-12 78.2 52 71.2
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 8.4e-12 75.9 85 47.1
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.0e-09 68.9 163 36.2
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 1.3e-07 62.0 259 24.3
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-06 58.9 115 41.7
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-06 58.9 115 41.7


User provided reference genes

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