Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.0e-90 336.7 163 100.0
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 2.2e-37 159.5 158 50.0
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 9.8e-33 144.1 102 57.8
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.7e-32 143.3 127 48.0
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 2.2e-32 142.9 132 50.0
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 4.8e-32 141.7 98 61.2
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 6.3e-32 141.4 94 62.8
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 6.3e-32 141.4 132 48.5
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.3e-32 141.4 107 54.2
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 1.1e-31 140.6 128 47.7
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.4e-31 140.2 128 46.9
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 1.8e-31 139.8 128 49.2
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.8e-31 139.8 128 46.9
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.8e-31 139.8 132 48.5
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 7.0e-31 137.9 123 47.2
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.2e-30 137.1 139 46.8
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.2e-30 137.1 100 55.0
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.2e-30 137.1 132 47.7
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.2e-30 137.1 131 48.1
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 1.2e-30 137.1 159 41.5
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 1.6e-30 136.7 99 55.6
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 2.0e-30 136.3 114 51.8
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.0e-30 136.3 103 53.4
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 3.5e-30 135.6 160 43.1
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 3.5e-30 135.6 128 48.4
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 3.5e-30 135.6 147 44.9
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 4.5e-30 135.2 126 44.4
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 4.5e-30 135.2 157 43.9
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 5.9e-30 134.8 101 58.4
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 5.9e-30 134.8 101 58.4
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 5.9e-30 134.8 101 58.4
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 5.9e-30 134.8 116 50.9
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 7.7e-30 134.4 159 45.3
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 7.7e-30 134.4 125 47.2
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.3e-29 133.7 131 51.1
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 1.7e-29 133.3 127 44.1
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 3.8e-29 132.1 99 51.5
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 5.0e-29 131.7 102 51.0
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 5.0e-29 131.7 127 45.7
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 6.6e-29 131.3 127 44.9
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 8.6e-29 131.0 119 49.6
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 1.1e-28 130.6 129 46.5
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.1e-28 130.6 108 53.7
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.1e-28 130.6 97 56.7
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.9e-28 129.8 121 55.4
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.9e-28 129.8 127 43.3
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.5e-28 129.4 154 44.2
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 3.3e-28 129.0 98 55.1
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.2e-28 128.6 121 47.1
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 7.2e-28 127.9 149 44.3
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 7.2e-28 127.9 98 55.1
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 7.2e-28 127.9 102 52.9
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 7.2e-28 127.9 155 40.0
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 7.2e-28 127.9 131 39.7
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 9.5e-28 127.5 132 43.9
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 9.5e-28 127.5 132 45.5
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.6e-27 126.7 132 44.7
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 1.6e-27 126.7 112 47.3
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 2.1e-27 126.3 156 42.3
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 2.8e-27 125.9 149 43.6
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 2.8e-27 125.9 93 53.8
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.8e-27 125.9 122 47.5
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 3.6e-27 125.6 131 45.0
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 3.6e-27 125.6 97 51.5
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.6e-27 125.6 97 53.6
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 4.7e-27 125.2 121 50.4
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 8.0e-27 124.4 151 44.4
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.4e-26 123.6 99 54.5
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.4e-26 123.6 116 49.1
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 1.4e-26 123.6 134 44.0
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 2.3e-26 122.9 106 50.9
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 3.0e-26 122.5 112 47.3
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 5.2e-26 121.7 128 49.2
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 6.8e-26 121.3 105 54.3
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 6.8e-26 121.3 105 54.3
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 6.8e-26 121.3 105 54.3
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 6.8e-26 121.3 105 54.3
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 6.8e-26 121.3 98 50.0
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 6.8e-26 121.3 125 44.0
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 8.9e-26 120.9 129 42.6
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 8.9e-26 120.9 115 49.6
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 8.9e-26 120.9 154 43.5
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 1.2e-25 120.6 125 48.0
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 1.2e-25 120.6 117 47.9
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.5e-25 120.2 97 52.6
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 1.5e-25 120.2 95 54.7
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.0e-25 119.8 118 49.2
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 2.0e-25 119.8 155 41.3
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 2.0e-25 119.8 120 42.5
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 2.0e-25 119.8 125 50.4
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 2.6e-25 119.4 120 46.7
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.6e-25 119.4 155 40.6
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 4.4e-25 118.6 90 50.0
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 4.4e-25 118.6 160 38.8
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 4.4e-25 118.6 118 48.3
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.4e-25 118.6 118 48.3
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 5.7e-25 118.2 136 46.3
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 5.7e-25 118.2 127 47.2
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 7.5e-25 117.9 90 53.3
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 7.5e-25 117.9 123 44.7
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 7.5e-25 117.9 125 49.6
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 9.8e-25 117.5 125 49.6
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.3e-24 117.1 85 56.5
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.3e-24 117.1 90 52.2
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.7e-24 116.7 121 47.9
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.7e-24 116.7 94 52.1
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.8e-24 115.9 131 44.3
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 3.7e-24 115.5 129 41.1
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 3.7e-24 115.5 122 47.5
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 4.9e-24 115.2 115 48.7
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 4.9e-24 115.2 122 41.0
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 6.3e-24 114.8 88 56.8
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 6.3e-24 114.8 90 55.6
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 6.3e-24 114.8 128 43.8
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 8.3e-24 114.4 108 47.2
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.3e-24 114.4 123 43.9
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 8.3e-24 114.4 121 44.6
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 8.3e-24 114.4 127 44.9
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 8.3e-24 114.4 100 58.0
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.4e-23 113.6 89 53.9
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.8e-23 113.2 155 38.1
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 2.4e-23 112.8 120 45.0
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 2.4e-23 112.8 108 47.2
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 3.2e-23 112.5 94 53.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 4.1e-23 112.1 115 42.6
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 5.4e-23 111.7 122 41.8
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 7.0e-23 111.3 107 46.7
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 7.0e-23 111.3 97 47.4
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 9.2e-23 110.9 130 43.1
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 9.2e-23 110.9 118 45.8
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.6e-22 110.2 153 38.6
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 1.6e-22 110.2 80 56.2
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.6e-22 110.2 125 44.0
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 2.0e-22 109.8 95 49.5
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 2.0e-22 109.8 95 49.5
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 2.7e-22 109.4 121 42.1
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.7e-22 109.4 115 41.7
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 4.5e-22 108.6 134 37.3
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.5e-22 108.6 96 46.9
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.3e-21 107.1 99 43.4
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 1.3e-21 107.1 133 40.6
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 1.7e-21 106.7 157 39.5
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 2.3e-21 106.3 97 43.3
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.3e-21 106.3 127 43.3
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 2.3e-21 106.3 113 45.1
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 2.9e-21 105.9 99 46.5
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 5.0e-21 105.1 115 46.1
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 6.6e-21 104.8 89 49.4
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 8.6e-21 104.4 106 49.1
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.5e-20 103.6 93 45.2
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 2.5e-20 102.8 81 53.1
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 3.3e-20 102.4 93 43.0
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.3e-20 102.4 157 36.3
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 3.3e-20 102.4 99 41.4
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 4.3e-20 102.1 97 42.3
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 5.6e-20 101.7 134 38.8
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 5.6e-20 101.7 97 44.3
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.2e-19 100.5 98 45.9
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 1.2e-19 100.5 97 43.3
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 1.6e-19 100.1 102 47.1
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 2.1e-19 99.8 97 43.3
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 2.1e-19 99.8 97 43.3
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 2.1e-19 99.8 97 43.3
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 2.1e-19 99.8 97 43.3
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 2.8e-19 99.4 130 42.3
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 4.0e-18 95.5 119 39.5
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 4.0e-18 95.5 138 35.5
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 4.0e-18 95.5 115 41.7
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 6.8e-18 94.7 87 46.0
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 2.6e-17 92.8 66 60.6
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 5.8e-17 91.7 118 43.2
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 5.4e-15 85.1 119 34.5
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.0e-13 80.9 94 36.2
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.1e-12 77.4 59 49.2
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 3.3e-12 75.9 111 31.5
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 7.5e-09 64.7 52 48.1
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.9e-08 62.0 73 45.2
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 8.3e-08 61.2 73 47.9
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 1.1e-07 60.8 78 46.2
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 1.1e-07 60.8 78 46.2
Ciclev10003504m.g Citrus clementina HOM05D008739 ORTHO05D010871 1.4e-07 60.5 71 42.3
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 1.9e-07 60.1 67 37.3
AagrBONN_evm.TU.Sc2ySwM_344.1126 Anthoceros agrestis HOM05D002444 ORTHO05D004748 1.2e-06 57.4 100 33.0
ATR1127G131 Amborella trichopoda HOM05D008739 ORTHO05D010871 3.5e-06 55.8 92 29.3
DCAR_009469 Daucus carota HOM05D008739 ORTHO05D010871 3.5e-06 55.8 133 27.8
CiPaw.01G083500 Carya illinoinensis HOM05D008739 ORTHO05D010871 6.0e-06 55.1 74 35.1


User provided reference genes

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