Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1571.2 782 100.0
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1247.3 775 79.7
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1225.7 774 78.2
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1220.3 775 76.9
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1218.4 775 76.9
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1214.5 773 77.6
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1202.2 812 73.5
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1199.9 772 76.8
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1197.2 816 73.2
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1195.6 774 75.8
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1186.0 775 75.2
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1186.0 774 75.7
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1185.6 750 77.5
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1185.6 770 75.7
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 774 74.8
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1181.8 770 75.5
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1181.8 770 75.6
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1179.1 772 74.7
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1177.9 772 75.6
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1174.5 775 74.1
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1172.1 812 71.1
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1172.1 772 75.3
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1171.4 772 74.6
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1169.1 772 73.7
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1169.1 776 73.6
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1167.9 776 74.4
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1165.6 772 74.0
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1164.1 776 72.9
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1161.7 772 73.6
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1158.3 772 74.0
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1158.3 774 73.0
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1157.5 773 72.7
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1156.4 773 73.6
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1153.7 775 72.9
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1150.6 772 72.3
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1149.0 770 73.2
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1148.7 779 73.2
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1147.9 775 72.0
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1147.5 759 74.3
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1146.0 781 72.6
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1146.0 774 72.5
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1145.6 774 72.2
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1135.6 777 72.2
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1134.0 758 74.4
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1133.2 772 71.9
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1132.9 760 74.3
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1132.5 774 72.4
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 754 74.3
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 771 71.9
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 771 71.6
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1130.5 775 72.5
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1129.4 780 72.6
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1125.9 773 70.1
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1125.2 773 70.2
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1124.8 773 70.4
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1123.6 772 71.1
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1123.2 769 72.4
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1122.8 773 70.2
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1122.8 772 71.8
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1122.8 775 71.0
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1120.9 775 70.5
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1119.4 776 69.8
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1119.0 775 70.3
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1117.8 881 64.9
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1117.8 777 71.6
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1117.1 775 69.9
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1115.1 773 70.1
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1114.4 777 71.3
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1112.8 775 69.9
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1110.9 777 70.0
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1110.5 773 69.9
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1110.1 774 69.6
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1109.4 778 69.9
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1106.3 773 69.1
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1097.0 773 68.8
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1095.1 786 69.6
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1088.9 762 71.3
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1088.2 774 69.4
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1087.8 774 68.3
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1077.8 772 68.4
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 5.3e-312 1073.5 784 67.0
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.0e-308 1063.1 754 69.4
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 6.0e-306 1053.9 784 66.6
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 1.9e-304 1048.9 782 66.1
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 3.7e-303 1044.6 677 74.9
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 9.0e-302 1040.0 787 65.6
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 9.0e-302 1040.0 699 72.7
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 1.5e-301 1039.3 780 65.8
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 3.9e-297 1024.6 769 66.8
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 1.5e-296 1022.7 754 68.3
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 2.0e-293 1012.3 695 72.4
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 2.2e-292 1008.8 732 69.7
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 8.5e-292 1006.9 789 64.9
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 1.1e-291 1006.5 665 74.3
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 2.1e-290 1002.3 747 65.7
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 6.7e-289 997.3 742 67.4
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 6.3e-287 990.7 770 66.1
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 5.9e-285 984.2 772 64.1
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 8.0e-282 973.8 764 63.4
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 2.0e-280 969.1 771 62.3
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 2.2e-279 965.7 753 65.2
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 1.8e-278 962.6 772 61.0
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 2.7e-266 922.2 753 63.1
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 2.9e-260 902.1 707 63.4
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.3e-259 898.7 634 70.7
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.2e-258 896.7 662 68.0
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 5.0e-244 848.2 664 64.9
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 1.3e-239 833.6 647 65.1
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 4.7e-234 815.1 606 69.3
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 7.5e-232 807.7 562 70.5
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 1.7e-220 770.0 509 73.9
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 3.1e-217 759.2 775 54.1
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 2.3e-204 716.5 354 98.0
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 1.6e-189 667.2 378 90.7
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 3.0e-188 662.9 448 72.3
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 6.7e-180 635.2 447 70.5
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 3.7e-146 523.1 606 50.2
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.2e-124 449.5 347 62.8
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 5.4e-113 412.9 272 75.0
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 3.9e-95 353.6 248 69.8
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 2.6e-91 340.9 250 64.4
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.5e-73 280.0 184 71.7
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.2e-72 278.9 355 45.1
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.8e-71 275.0 266 55.3
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 2.5e-70 271.2 259 60.2
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 2.2e-66 258.1 254 54.7
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 2.9e-66 257.7 225 56.0
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.0e-62 245.0 155 75.5
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.5e-58 229.9 137 78.8
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 2.5e-57 228.0 214 59.3
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-55 222.2 137 75.9
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 4.8e-45 187.2 150 62.0
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-44 183.3 243 44.4
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 4.5e-43 180.6 149 59.7
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 4.5e-43 180.6 105 81.9
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.0e-42 179.5 105 82.9
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.2e-40 172.6 108 72.2
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 2.7e-40 171.4 105 74.3
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 3.6e-40 171.0 117 71.8
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.6e-40 171.0 104 76.0
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 8.8e-39 166.4 119 66.4
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.7e-37 162.2 101 74.3
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.1e-33 149.4 83 83.1
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 2.7e-32 144.8 92 77.2
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 4.0e-31 141.0 95 68.4
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 5.2e-31 140.6 83 77.1
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 4.1e-28 131.0 104 66.3
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 9.1e-28 129.8 79 73.4
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.6e-26 123.6 89 66.3
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.6e-26 123.6 89 66.3
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.5e-25 122.5 89 65.2
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.9e-25 122.1 83 68.7
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.6e-25 120.6 79 68.4
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 6.8e-23 113.6 90 61.1
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 4.9e-21 107.5 71 70.4
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.4e-20 105.1 214 34.1
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 4.6e-19 100.9 163 38.7
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.7e-18 99.0 214 33.2
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 8.9e-15 86.7 86 55.8
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 4.9e-13 80.9 169 36.1
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 7.0e-12 77.0 77 49.4
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-09 69.7 51 62.7
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.9e-09 68.9 45 68.9
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.8e-07 62.4 190 25.8
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 4.0e-07 61.2 37 64.9
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 2.0e-06 58.9 56 57.1
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 3.4e-06 58.2 151 29.1
Oeu046895.1 Olea europaea HOM05D003800 ORTHO05D004549 3.4e-06 58.2 177 28.2
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 4.4e-06 57.8 177 27.7
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 4.4e-06 57.8 177 27.7
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 7.5e-06 57.0 144 31.2
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 7.5e-06 57.0 144 31.2
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 9.8e-06 56.6 144 31.2


User provided reference genes

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