Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 9.9e-52 206.5 101 100.0
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.3e-51 206.1 101 99.0
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.7e-33 145.2 83 80.7
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.3e-32 142.1 83 78.3
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.1e-31 139.8 87 79.3
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 1.1e-31 139.8 83 78.3
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 3.3e-31 138.3 87 78.2
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 3.3e-31 138.3 75 88.0
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 5.7e-31 137.5 83 75.9
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 5.7e-31 137.5 83 74.7
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 7.4e-31 137.1 86 74.4
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 7.4e-31 137.1 89 74.2
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 9.7e-31 136.7 93 72.0
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.6e-30 136.0 80 77.5
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.6e-30 136.0 89 75.3
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.6e-30 136.0 76 85.5
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 2.2e-30 135.6 83 75.9
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 3.7e-30 134.8 83 74.7
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 3.7e-30 134.8 83 74.7
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 3.7e-30 134.8 93 71.0
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 4.8e-30 134.4 101 62.4
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 6.3e-30 134.0 82 76.8
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 6.3e-30 134.0 85 72.9
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.1e-29 133.3 87 74.7
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.4e-29 132.9 91 73.6
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 1.8e-29 132.5 83 73.5
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.8e-29 132.5 83 73.5
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.1e-29 131.7 83 75.9
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 4.1e-29 131.3 83 74.7
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 4.1e-29 131.3 83 72.3
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 4.1e-29 131.3 83 72.3
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 4.1e-29 131.3 80 77.5
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 4.1e-29 131.3 83 74.7
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 6.9e-29 130.6 80 76.2
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 9.0e-29 130.2 83 71.1
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.2e-28 129.8 94 68.1
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.2e-28 129.8 92 65.2
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.5e-28 129.4 86 74.4
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.5e-28 129.4 78 78.2
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.0e-28 129.0 85 72.9
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.0e-28 129.0 88 71.6
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.0e-28 129.0 83 69.9
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 2.0e-28 129.0 86 72.1
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 2.0e-28 129.0 98 64.3
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 2.0e-28 129.0 80 73.8
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.6e-28 128.6 78 75.6
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.6e-28 128.6 85 71.8
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 3.4e-28 128.3 85 71.8
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.4e-28 128.3 83 69.9
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 3.4e-28 128.3 90 72.2
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 4.5e-28 127.9 89 71.9
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 7.7e-28 127.1 92 70.7
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 7.7e-28 127.1 101 62.4
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.7e-28 127.1 83 69.9
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 7.7e-28 127.1 87 71.3
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.0e-27 126.7 80 76.2
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.0e-27 126.7 96 61.5
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.2e-27 125.6 86 72.1
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 2.2e-27 125.6 84 70.2
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 3.8e-27 124.8 85 69.4
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 3.8e-27 124.8 86 70.9
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 5.0e-27 124.4 83 72.3
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 6.5e-27 124.0 93 62.4
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 6.5e-27 124.0 80 71.2
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.1e-26 123.2 84 70.2
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 1.1e-26 123.2 96 60.4
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.1e-26 123.2 86 68.6
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 1.1e-26 123.2 78 70.5
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 1.4e-26 122.9 82 70.7
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-26 122.5 88 65.9
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.9e-26 122.5 88 65.9
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.9e-26 122.5 102 60.8
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 3.2e-26 121.7 82 68.3
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 3.2e-26 121.7 73 78.1
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 3.2e-26 121.7 86 69.8
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 5.5e-26 120.9 89 68.5
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 5.5e-26 120.9 94 61.7
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 7.2e-26 120.6 89 66.3
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 9.4e-26 120.2 80 72.5
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.2e-25 119.8 105 58.1
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.1e-25 119.0 82 68.3
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.1e-25 119.0 82 68.3
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.7e-25 118.6 79 68.4
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 2.7e-25 118.6 94 61.7
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.6e-25 118.2 93 65.6
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.6e-25 118.2 93 65.6
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 6.1e-25 117.5 71 74.6
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 6.1e-25 117.5 71 74.6
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 6.1e-25 117.5 106 59.4
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 6.1e-25 117.5 80 70.0
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 1.0e-24 116.7 83 63.9
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.8e-24 115.9 86 64.0
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 2.3e-24 115.5 86 67.4
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 2.3e-24 115.5 93 65.6
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 3.0e-24 115.2 74 70.3
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 3.0e-24 115.2 74 70.3
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 5.1e-24 114.4 89 64.0
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 5.1e-24 114.4 78 66.7
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 6.7e-24 114.0 94 61.7
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 6.7e-24 114.0 78 66.7
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 8.8e-24 113.6 99 56.6
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 1.1e-23 113.2 78 65.4
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.5e-23 112.1 78 66.7
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 2.5e-23 112.1 100 53.0
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 4.3e-23 111.3 78 67.9
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 4.3e-23 111.3 73 74.0
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 7.4e-23 110.5 78 65.4
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 7.4e-23 110.5 76 72.4
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 7.4e-23 110.5 76 72.4
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 7.4e-23 110.5 76 71.1
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 9.7e-23 110.2 73 72.6
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.3e-22 109.8 66 77.3
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 1.3e-22 109.8 66 77.3
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.7e-22 109.4 74 68.9
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.7e-22 109.4 74 68.9
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 2.2e-22 109.0 74 68.9
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 2.2e-22 109.0 74 68.9
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 2.2e-22 109.0 80 63.8
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.2e-22 109.0 86 64.0
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 2.8e-22 108.6 89 60.7
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.7e-22 108.2 70 71.4
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.7e-22 108.2 75 69.3
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.7e-22 108.2 66 75.8
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.8e-22 107.8 66 75.8
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 6.3e-22 107.5 72 68.1
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.4e-21 106.3 66 74.2
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.4e-21 105.5 66 74.2
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 3.1e-21 105.1 80 63.8
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 4.1e-21 104.8 96 56.2
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 5.3e-21 104.4 67 71.6
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.0e-19 100.1 84 58.3
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.3e-19 99.8 74 60.8
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 1.7e-19 99.4 80 57.5
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 3.8e-19 98.2 78 62.8
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 5.0e-19 97.8 71 63.4
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.4e-18 96.3 87 54.0
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 3.2e-18 95.1 72 63.9
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.6e-17 92.8 66 63.6
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 2.1e-17 92.4 91 53.8
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 2.3e-16 89.0 63 65.1
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 2.3e-16 89.0 62 62.9
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.3e-16 89.0 84 53.6
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.0e-16 88.6 83 53.0
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.0e-15 85.9 58 69.0
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.4e-15 84.7 58 67.2
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.7e-14 82.8 83 49.4
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.7e-14 82.8 58 65.5
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 6.3e-14 80.9 77 49.4
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.4e-13 79.0 62 56.5
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 7.0e-13 77.4 116 41.4
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.0e-12 75.9 58 62.1
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.3e-11 73.2 44 70.5
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 5.0e-11 71.2 62 48.4
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.2e-09 66.6 69 44.9
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 5.2e-08 61.2 38 68.4


User provided reference genes

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