Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.5e-220 768.1 409 100.0
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.9e-202 709.1 409 93.6
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.5e-141 505.0 413 70.7
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.5e-130 470.3 408 66.9
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 3.1e-128 462.6 421 64.8
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 9.1e-128 461.1 406 67.5
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 4.5e-127 458.8 407 65.4
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 5.9e-127 458.4 408 65.4
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 2.9e-126 456.1 408 65.7
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 3.8e-126 455.7 401 67.1
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 6.5e-126 454.9 409 66.0
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 8.5e-126 454.5 410 66.1
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.9e-125 453.4 414 65.2
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 2.5e-125 453.0 404 64.9
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 4.2e-125 452.2 408 65.4
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 9.4e-125 451.1 417 64.7
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 4.7e-124 448.7 405 66.4
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.7e-124 448.7 401 66.1
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 6.1e-124 448.4 411 65.2
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.9e-124 448.0 417 64.5
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.8e-123 446.8 417 64.5
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.8e-123 446.8 375 69.3
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 3.0e-123 446.0 417 64.5
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 3.9e-123 445.7 411 64.2
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 6.7e-123 444.9 413 64.4
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.5e-122 443.7 412 64.3
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.3e-121 440.7 412 63.8
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.1e-120 437.6 413 62.7
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.4e-120 437.2 409 63.1
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 9.1e-120 434.5 404 63.1
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.2e-119 434.1 408 63.5
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.2e-119 434.1 423 63.1
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.2e-119 434.1 409 64.1
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 2.6e-119 433.0 415 63.6
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 3.5e-119 432.6 434 60.6
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 4.5e-119 432.2 412 62.9
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 2.2e-118 429.9 404 63.6
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 8.5e-118 427.9 430 61.6
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 5.5e-117 425.2 413 62.7
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 5.5e-117 425.2 411 63.3
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 7.2e-117 424.9 456 58.1
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 9.4e-117 424.5 410 63.7
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.2e-116 424.1 411 62.8
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.6e-116 423.7 413 62.7
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 6.1e-116 421.8 408 63.2
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 1.1e-114 417.5 420 62.1
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 2.6e-114 416.4 378 67.2
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.3e-114 416.0 413 61.5
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 4.4e-114 415.6 405 62.0
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 5.7e-114 415.2 410 62.9
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 7.4e-114 414.8 412 62.6
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 9.7e-114 414.5 410 62.4
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 9.7e-114 414.5 394 63.5
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 1.7e-113 413.7 413 62.0
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 3.1e-112 409.5 428 60.7
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 4.1e-112 409.1 373 65.4
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.0e-111 406.8 416 62.0
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 3.5e-111 406.0 416 62.3
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 4.5e-111 405.6 407 60.2
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.0e-110 404.4 407 60.0
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.3e-110 404.1 410 59.3
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 2.2e-110 403.3 392 63.5
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.8e-110 402.5 408 64.5
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 5.0e-110 402.1 400 60.2
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 8.5e-110 401.4 417 59.7
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.1e-109 401.0 405 61.5
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 5.5e-109 398.7 407 60.0
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.2e-108 397.5 402 60.2
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.7e-108 396.4 402 59.0
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.0e-107 394.4 395 60.3
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 1.0e-107 394.4 414 59.4
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.2e-106 391.0 409 60.4
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.2e-106 391.0 415 57.6
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 2.0e-106 390.2 414 58.9
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.7e-105 387.1 436 56.0
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 2.2e-105 386.7 417 58.0
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 1.2e-103 380.9 375 61.6
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.7e-103 379.8 266 78.9
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 3.5e-103 379.4 413 58.8
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.0e-102 377.9 482 52.9
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.3e-102 377.5 395 60.8
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.5e-101 374.0 402 58.5
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-101 374.0 392 58.9
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.5e-101 374.0 392 58.9
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.2e-100 370.9 375 60.8
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 2.7e-100 369.8 406 57.9
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 6.1e-100 368.6 411 56.7
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.4e-99 367.5 382 58.9
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 1.3e-97 360.9 398 58.5
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 2.2e-97 360.1 410 57.3
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.9e-94 349.7 393 55.2
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 2.9e-94 349.7 309 67.0
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 6.6e-94 348.6 406 55.7
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.5e-93 346.7 415 54.9
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 3.3e-93 346.3 402 56.2
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.3e-93 346.3 403 54.1
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 5.5e-93 345.5 411 54.3
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 7.2e-93 345.1 410 54.9
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 7.2e-93 345.1 403 53.8
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.6e-90 336.7 415 57.1
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 7.5e-90 335.1 335 59.7
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 2.2e-89 333.6 417 52.3
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 4.9e-89 332.4 414 53.4
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 5.4e-88 328.9 382 53.7
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 7.0e-88 328.6 413 53.3
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 6.6e-86 322.0 398 52.0
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.6e-84 317.4 405 52.3
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 4.7e-84 315.8 423 53.2
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.8e-83 313.9 307 61.6
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 2.9e-81 306.6 431 48.7
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 7.8e-79 298.5 306 60.8
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 3.1e-75 286.6 332 53.9
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 2.9e-73 280.0 314 56.1
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 3.9e-70 269.6 247 62.8
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.2e-68 264.6 413 47.2
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 8.1e-68 261.9 263 62.0
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 2.3e-67 260.4 332 50.3
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 1.2e-66 258.1 272 59.6
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 7.6e-66 255.4 272 59.6
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 6.4e-65 252.3 273 60.4
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 3.2e-64 250.0 272 58.8
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.1e-64 249.6 274 57.7
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 3.5e-63 246.5 419 44.2
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 8.6e-62 241.9 271 56.8
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 6.8e-59 232.3 343 48.1
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 2.0e-58 230.7 270 57.4
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 2.7e-55 220.3 252 55.2
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.0e-54 218.4 263 54.0
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.3e-53 213.4 463 37.6
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 5.3e-51 206.1 174 66.1
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 6.9e-51 205.7 450 37.8
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 3.8e-49 199.9 265 51.3
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.9e-45 187.6 134 70.9
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 4.3e-45 186.4 182 60.4
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.6e-44 184.5 133 70.7
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 6.4e-41 172.6 401 39.2
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 7.9e-39 165.6 190 59.5
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 4.8e-36 156.4 192 53.1
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 6.9e-35 152.5 468 32.7
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.2e-31 141.7 140 60.0
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.6e-31 139.8 137 60.6
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 9.0e-27 125.6 109 64.2
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 8.4e-25 119.0 113 56.6
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 5.1e-22 109.8 125 55.2
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.8e-11 74.7 136 39.0
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.5e-10 71.6 232 37.1
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 7.2e-08 62.8 37 78.4
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 2.3e-06 57.8 33 78.8
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 3.0e-06 57.4 108 38.0


User provided reference genes

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