Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 6.4e-249 863.6 431 100.0
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.1e-131 474.2 358 68.7
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 2.7e-130 469.5 404 62.6
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 2.7e-130 469.5 361 67.6
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 2.7e-130 469.5 383 64.5
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 6.0e-130 468.4 344 69.8
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.0e-129 467.6 417 60.2
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.3e-129 467.2 388 64.4
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 2.3e-129 466.5 391 62.9
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 3.0e-129 466.1 340 68.8
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 2.5e-128 463.0 402 61.2
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 5.6e-128 461.8 392 62.8
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 7.3e-128 461.5 338 70.1
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 1.6e-127 460.3 336 69.3
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 3.6e-127 459.1 344 67.7
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 8.1e-127 458.0 348 67.5
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 8.1e-127 458.0 350 67.4
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.1e-126 457.6 406 60.6
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 1.1e-126 457.6 344 68.0
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.8e-126 456.8 427 58.8
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 1.8e-126 456.8 349 67.3
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 2.4e-126 456.4 356 66.0
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 8.9e-126 454.5 357 66.1
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 1.2e-125 454.1 373 64.3
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.5e-125 453.8 359 65.2
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 1.5e-125 453.8 336 68.8
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.5e-125 453.8 342 67.5
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.5e-125 453.8 342 67.5
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 2.0e-125 453.4 410 60.0
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 2.6e-125 453.0 336 68.5
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.4e-125 452.2 363 65.8
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 4.4e-125 452.2 337 68.2
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.8e-125 451.8 351 67.0
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 5.8e-125 451.8 385 62.6
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 5.8e-125 451.8 346 67.3
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 5.8e-125 451.8 401 60.6
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 7.6e-125 451.4 340 67.4
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 7.6e-125 451.4 365 64.9
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 7.6e-125 451.4 425 58.4
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 9.9e-125 451.1 424 59.4
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 9.9e-125 451.1 404 60.6
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.3e-124 450.7 348 65.8
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 1.3e-124 450.7 344 66.0
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 1.3e-124 450.7 351 65.8
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.3e-124 450.7 384 62.5
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.4e-124 448.0 439 57.2
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 1.9e-123 446.8 338 66.3
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.4e-123 446.4 352 66.5
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 3.2e-123 446.0 337 67.7
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 9.2e-123 444.5 416 59.9
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.1e-122 443.4 372 62.9
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 4.6e-122 442.2 390 61.5
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 6.0e-122 441.8 344 66.3
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 6.0e-122 441.8 340 66.2
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 1.0e-121 441.0 375 61.1
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 1.3e-121 440.7 337 65.9
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 2.3e-121 439.9 341 66.6
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 5.1e-121 438.7 427 57.8
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 1.9e-120 436.8 406 57.6
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 1.3e-119 434.1 337 65.0
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.6e-119 433.7 347 64.3
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 1.8e-118 430.3 367 61.9
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.8e-118 430.3 344 62.5
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 2.4e-118 429.9 344 63.4
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 5.3e-118 428.7 383 58.7
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 9.0e-118 427.9 287 73.5
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 1.2e-117 427.6 343 63.6
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 2.0e-117 426.8 345 63.5
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 2.6e-117 426.4 344 61.3
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 2.6e-117 426.4 332 64.2
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 9.9e-117 424.5 344 63.7
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 1.7e-116 423.7 350 62.6
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 2.2e-116 423.3 350 62.9
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 2.9e-116 422.9 344 62.2
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 2.9e-116 422.9 344 62.2
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 4.9e-116 422.2 337 63.2
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 1.4e-115 420.6 344 61.6
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 2.1e-114 416.8 366 57.1
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.5e-114 416.0 366 57.1
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.0e-113 414.5 350 58.9
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 1.0e-113 414.5 339 60.2
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 8.7e-113 411.4 384 57.8
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 8.7e-113 411.4 561 45.6
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.1e-112 411.0 384 57.8
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 3.3e-112 409.5 405 54.1
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 1.6e-111 407.1 526 47.9
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 1.1e-110 404.4 384 56.5
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 1.1e-110 404.4 384 56.5
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 6.9e-110 401.7 384 55.5
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 9.0e-110 401.4 400 55.2
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 2.0e-109 400.2 384 55.5
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 7.6e-109 398.3 341 58.9
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 3.8e-108 396.0 363 57.6
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 3.2e-107 392.9 342 61.4
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 2.1e-106 390.2 338 60.1
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 1.8e-102 377.1 403 51.6
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.0e-100 371.3 337 59.9
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 2.9e-100 369.8 218 80.3
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 1.1e-99 367.9 213 81.7
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 4.2e-99 365.9 335 57.3
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 6.0e-98 362.1 391 50.9
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 6.0e-98 362.1 400 51.8
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.8e-97 360.5 254 70.5
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 2.3e-97 360.1 475 47.8
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 4.3e-96 355.9 306 59.8
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 8.2e-95 351.7 323 60.4
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 6.9e-94 348.6 270 61.9
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.2e-92 343.6 285 62.1
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 2.5e-88 330.1 255 63.1
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 1.5e-85 320.9 257 60.7
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 2.6e-85 320.1 269 64.3
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 1.3e-84 317.8 188 77.7
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 1.3e-84 317.8 415 44.3
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.4e-78 297.0 207 69.1
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.2e-77 294.7 558 37.3
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.2e-76 290.4 215 63.7
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-75 287.7 245 58.0
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 3.0e-73 280.0 237 63.7
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 2.2e-71 273.9 235 63.8
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 4.1e-70 269.6 216 61.1
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 1.5e-69 267.7 234 61.5
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 6.1e-66 255.8 340 47.4
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 6.5e-52 209.1 238 52.9
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 7.2e-43 179.1 248 40.7
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.4e-38 164.1 252 36.5
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 4.3e-27 126.7 291 32.0
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 8.9e-25 119.0 255 33.3
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 4.9e-23 113.2 87 69.0
PSO063G6322 Papaver somniferum HOM05D004930 ORTHO05D006531 2.1e-18 97.8 62 79.0
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.8e-16 89.7 204 33.8
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 2.4e-14 84.3 232 28.4
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 3.5e-13 80.5 166 33.1
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 6.0e-13 79.7 56 73.2
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 7.8e-13 79.3 130 38.5
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 1.0e-12 79.0 251 27.5
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 1.2e-10 72.0 156 34.6
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 2.4e-09 67.8 75 46.7
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 3.1e-09 67.4 125 37.6
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.6e-08 64.3 53 58.5
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.4e-08 63.9 53 58.5
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.4e-08 63.9 53 58.5
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 5.8e-08 63.2 165 32.1
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-07 62.0 53 54.7
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 4.9e-07 60.1 78 41.0
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.4e-07 59.7 53 52.8
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.4e-07 59.7 53 52.8
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.4e-07 59.7 53 52.8
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 1.1e-06 58.9 53 52.8


User provided reference genes

Program Settings