Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 8.9e-176 620.2 311 100.0
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 3.0e-171 605.1 311 97.7
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 5.0e-94 348.6 318 59.1
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 5.9e-87 325.1 320 57.2
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 4.0e-83 312.4 298 56.4
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 2.0e-82 310.1 301 53.2
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.3e-81 307.4 299 53.5
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 2.4e-80 303.1 299 54.8
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 3.1e-80 302.8 297 57.9
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 2.0e-79 300.1 302 52.3
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.0e-78 297.7 300 52.7
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 2.1e-76 290.0 299 51.8
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 3.6e-76 289.3 302 52.0
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 6.1e-76 288.5 300 49.3
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 4.0e-75 285.8 295 52.2
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 2.6e-74 283.1 298 50.7
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 9.8e-74 281.2 300 49.7
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 6.3e-73 278.5 296 51.4
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 1.8e-72 276.9 310 48.4
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.2e-71 274.2 302 48.3
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.7e-71 273.1 301 49.5
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 7.7e-71 271.6 300 49.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 1.7e-70 270.4 298 50.0
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.1e-69 267.7 300 49.7
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.1e-69 267.7 301 51.5
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.1e-69 267.7 301 51.5
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 7.2e-69 265.0 300 48.7
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 7.2e-69 265.0 298 50.3
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-68 264.2 301 51.2
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.6e-68 263.8 313 50.2
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 2.1e-68 263.5 296 49.3
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.6e-68 262.7 301 50.8
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.8e-67 260.4 296 48.6
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 5.2e-67 258.8 304 49.3
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.6e-66 256.5 298 46.0
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 4.4e-66 255.8 309 47.2
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 3.7e-65 252.7 293 46.8
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.9e-65 252.3 346 45.4
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 6.3e-65 251.9 299 45.5
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 6.3e-65 251.9 298 47.7
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 1.4e-64 250.8 303 46.5
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.4e-64 250.8 320 49.7
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 9.2e-64 248.1 295 46.8
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 9.2e-64 248.1 270 48.9
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 9.2e-64 248.1 300 44.3
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 2.0e-63 246.9 301 47.2
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 2.7e-63 246.5 304 45.4
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 7.8e-63 245.0 298 45.0
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 4.3e-61 239.2 294 46.6
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 5.6e-61 238.8 301 44.5
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 5.6e-61 238.8 305 45.6
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.2e-60 237.7 296 46.6
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.2e-60 237.7 289 45.7
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 3.6e-60 236.1 298 43.6
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 3.1e-59 233.0 291 46.0
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 3.1e-59 233.0 278 51.4
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 4.0e-59 232.6 292 46.6
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 5.2e-59 232.3 291 45.7
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 6.8e-59 231.9 337 42.4
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.4e-58 229.6 297 44.1
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 1.1e-56 224.6 291 44.3
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 2.4e-56 223.4 292 43.8
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 2.0e-55 220.3 291 43.6
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 2.7e-55 219.9 298 43.3
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 4.6e-55 219.2 294 42.2
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 6.0e-55 218.8 297 42.1
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 5.0e-54 215.7 296 42.9
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 2.5e-53 213.4 297 43.8
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 7.3e-53 211.8 296 43.6
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 4.7e-52 209.1 211 51.2
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.4e-51 207.6 297 44.4
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.3e-51 206.8 299 42.5
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.0e-50 203.8 215 50.2
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.6e-50 203.4 276 41.7
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 2.9e-49 199.9 290 41.0
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 6.4e-49 198.7 211 51.2
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 1.2e-47 194.5 289 41.5
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.2e-47 194.5 289 41.2
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.7e-47 193.4 330 36.7
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 6.0e-47 192.2 269 42.8
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.7e-46 190.7 300 39.0
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 5.1e-46 189.1 215 47.0
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 8.1e-44 181.8 289 39.1
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.1e-43 179.9 289 38.8
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.5e-42 177.6 147 59.9
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.7e-41 174.1 288 38.5
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.1e-40 171.4 300 37.7
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 3.2e-40 169.9 205 43.9
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.3e-38 163.7 231 44.2
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 4.7e-36 156.0 285 34.0
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 4.7e-36 156.0 192 44.3
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.8e-35 154.1 202 43.1
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 2.9e-33 146.7 218 41.3
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.6e-31 141.0 227 39.2
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 2.7e-31 140.2 229 39.3
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 3.5e-31 139.8 294 33.7
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 7.8e-31 138.7 233 36.5
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 3.0e-30 136.7 232 39.7
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.1e-29 134.8 306 33.0
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.9e-29 134.0 112 63.4
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 2.8e-28 130.2 232 37.1
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 4.8e-28 129.4 233 33.9
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.4e-27 127.9 212 36.3
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 9.9e-26 121.7 140 47.1
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 8.4e-25 118.6 179 40.8
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 1.1e-24 118.2 160 39.4
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.4e-24 117.9 306 29.1
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 7.1e-24 115.5 340 28.2
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 9.3e-24 115.2 293 29.7
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.7e-23 113.6 219 37.0
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.7e-22 110.9 240 31.7
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 8.7e-22 108.6 114 56.1
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.8e-20 103.6 129 51.2
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.4e-19 101.3 94 54.3
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 5.3e-19 99.4 77 64.9
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.7e-17 94.4 109 45.0
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 6.4e-17 92.4 62 67.7
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.6e-15 86.3 83 55.4
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.6e-15 86.3 83 55.4
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 7.9e-15 85.5 62 64.5
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 1.0e-14 85.1 51 70.6
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 2.3e-14 84.0 62 62.9
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.9e-14 83.2 139 36.7
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 7.4e-13 79.0 132 35.6
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 6.2e-12 75.9 61 55.7
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.4e-11 74.7 201 29.9
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.8e-11 74.3 104 38.5
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 1.3e-06 58.2 154 27.9


User provided reference genes

Program Settings