Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 3.1e-62 241.5 114 100.0
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 4.1e-62 241.1 114 99.1
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 3.2e-54 214.9 114 87.7
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 9.2e-54 213.4 114 86.0
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.6e-53 212.6 110 89.1
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 8.6e-52 206.8 110 86.4
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 8.6e-52 206.8 110 86.4
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.9e-51 205.7 110 85.5
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.9e-51 205.7 110 86.4
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 5.6e-51 204.1 110 85.5
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 3.6e-50 201.4 110 84.5
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 3.6e-50 201.4 110 84.5
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.6e-50 201.4 110 84.5
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 3.6e-50 201.4 115 83.5
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 3.6e-50 201.4 110 85.5
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 4.7e-50 201.1 110 84.5
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 8.0e-50 200.3 110 83.6
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 8.0e-50 200.3 114 80.7
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.0e-49 199.9 110 84.5
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.4e-49 199.5 110 82.7
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.8e-49 199.1 110 83.6
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.8e-49 199.1 110 82.7
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.8e-49 199.1 110 82.7
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 1.8e-49 199.1 110 83.6
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.8e-49 199.1 111 82.0
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.3e-49 198.7 110 82.7
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 4.0e-49 198.0 113 81.4
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 5.2e-49 197.6 110 80.9
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 5.2e-49 197.6 113 81.4
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 5.2e-49 197.6 110 82.7
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 8.9e-49 196.8 110 80.9
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 8.9e-49 196.8 110 81.8
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 8.9e-49 196.8 113 79.6
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.5e-48 196.1 110 81.8
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 1.5e-48 196.1 109 82.6
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.0e-48 195.7 113 80.5
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 3.4e-48 194.9 111 80.2
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.4e-48 194.9 110 81.8
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.4e-48 194.5 116 79.3
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 5.8e-48 194.1 113 79.6
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 5.8e-48 194.1 110 80.9
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 5.8e-48 194.1 118 78.0
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 5.8e-48 194.1 110 80.0
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 7.5e-48 193.7 110 80.9
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 9.8e-48 193.4 110 80.0
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 9.8e-48 193.4 111 79.3
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 9.8e-48 193.4 106 82.1
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 9.8e-48 193.4 108 81.5
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.7e-47 192.6 109 80.7
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.7e-47 192.6 113 77.9
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.7e-47 192.6 106 83.0
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.7e-47 192.6 111 81.1
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 2.2e-47 192.2 108 80.6
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.2e-47 192.2 108 81.5
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 3.7e-47 191.4 129 72.1
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 6.4e-47 190.7 108 80.6
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.4e-47 190.7 108 80.6
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.1e-46 189.9 111 78.4
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 1.1e-46 189.9 108 79.6
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.9e-46 189.1 108 78.7
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 108 78.7
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.9e-46 189.1 108 78.7
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.9e-46 189.1 108 78.7
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.9e-46 189.1 108 80.6
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 2.4e-46 188.7 108 78.7
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 4.1e-46 188.0 108 78.7
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 5.4e-46 187.6 110 75.5
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 5.4e-46 187.6 108 78.7
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 7.0e-46 187.2 108 77.8
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 7.0e-46 187.2 111 75.7
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 7.0e-46 187.2 111 75.7
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 7.0e-46 187.2 111 75.7
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 7.0e-46 187.2 108 77.8
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 7.0e-46 187.2 111 75.7
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 7.0e-46 187.2 111 75.7
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 9.2e-46 186.8 111 74.8
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 9.2e-46 186.8 107 80.4
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.2e-45 186.4 108 77.8
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 1.2e-45 186.4 108 77.8
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.2e-45 186.4 108 78.7
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.2e-45 186.4 107 78.5
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.2e-45 186.4 108 77.8
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.6e-45 186.0 107 78.5
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 1.6e-45 186.0 110 77.3
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 2.7e-45 185.3 111 77.5
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 2.7e-45 185.3 109 78.0
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 4.6e-45 184.5 108 76.9
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 4.6e-45 184.5 108 76.9
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 4.6e-45 184.5 108 75.9
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 6.0e-45 184.1 110 75.5
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 7.8e-45 183.7 111 75.7
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 7.8e-45 183.7 108 76.9
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 7.8e-45 183.7 110 77.3
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 1.7e-44 182.6 110 73.6
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 1.7e-44 182.6 108 76.9
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.0e-44 181.8 107 78.5
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 3.9e-44 181.4 108 74.1
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 5.0e-44 181.0 111 73.9
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 6.6e-44 180.6 108 75.0
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 1.9e-43 179.1 109 76.1
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.5e-43 178.7 110 70.0
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 3.3e-43 178.3 109 74.3
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.2e-42 174.1 101 78.2
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 4.0e-41 171.4 97 80.4
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 4.0e-41 171.4 110 72.7
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 5.2e-41 171.0 116 70.7
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.2e-40 169.9 116 69.8
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.5e-40 169.5 110 66.4
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 1.5e-40 169.5 143 58.7
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.5e-40 169.5 92 84.8
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.6e-40 168.7 99 78.8
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 4.4e-40 167.9 182 51.1
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.7e-39 166.0 105 70.5
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 2.2e-39 165.6 102 71.6
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.9e-39 165.2 99 73.7
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 4.1e-38 161.4 97 73.2
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 4.1e-38 161.4 97 74.2
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 2.3e-36 155.6 98 72.4
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 3.0e-36 155.2 119 63.9
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.6e-34 149.4 84 82.1
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.4e-33 146.4 108 64.8
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 2.0e-32 142.5 113 60.2
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 9.9e-32 140.2 107 55.1
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.3e-31 139.8 110 57.3
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.7e-31 139.4 116 62.9
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.1e-27 126.7 104 51.9
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.5e-27 126.3 108 57.4
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.5e-27 125.6 80 71.2
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 8.9e-25 117.1 105 51.4
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.3e-23 113.2 60 80.0
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.9e-22 109.4 100 50.0
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 1.6e-21 106.3 96 51.0
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 2.1e-21 105.9 58 77.6
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 3.5e-21 105.1 60 75.0
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 4.6e-21 104.8 57 75.4
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.9e-20 101.7 80 65.0
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.5e-19 99.0 60 75.0
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 4.3e-19 98.2 96 46.9
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 4.0e-17 91.7 148 39.9
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 5.3e-17 91.3 113 43.4
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.0e-16 89.4 51 84.3
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 9.9e-16 87.0 51 82.4
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 2.9e-15 85.5 50 80.0
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 4.2e-14 81.6 55 63.6
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 1.1e-11 73.6 46 65.2
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 1.3e-10 70.1 99 36.4
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 2.1e-10 69.3 51 68.6
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 5.5e-06 54.7 81 40.7


User provided reference genes

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