Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1808.9 899 100.0
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1756.9 899 96.9
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1132.1 932 64.5
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 946 63.8
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1119.0 939 63.4
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 987 61.0
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 987 60.7
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 987 60.7
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1110.1 917 63.0
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1097.0 971 60.6
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 892 64.1
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 928 61.7
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1096.3 905 63.4
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1095.9 935 61.8
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1095.5 930 63.1
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1092.0 937 61.6
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1091.6 916 61.7
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 900 62.8
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 911 62.7
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1087.4 892 64.0
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 940 60.5
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1083.6 914 62.9
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1083.6 922 61.2
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1080.1 880 63.4
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 913 62.2
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 910 61.2
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 6.1e-312 1073.9 910 63.0
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 1.8e-311 1072.4 909 61.9
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 4.7e-310 1067.8 899 63.5
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 1.0e-309 1066.6 908 62.0
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.9e-309 1064.7 916 62.0
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 3.9e-309 1064.7 926 61.8
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 2.0e-308 1062.4 888 62.4
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 6.3e-307 1057.4 878 62.1
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 2.6e-305 1052.0 931 59.9
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.3e-304 1049.7 917 61.0
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 1.7e-304 1049.3 909 61.5
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 2.9e-304 1048.5 888 62.8
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 2.9e-304 1048.5 914 59.1
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 1.1e-303 1046.6 898 62.7
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.9e-303 1045.8 913 60.8
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 5.5e-303 1044.3 917 58.1
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 9.4e-303 1043.5 898 60.6
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 4.7e-302 1041.2 896 61.6
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 6.1e-302 1040.8 949 59.6
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 8.0e-302 1040.4 925 60.2
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 8.0e-302 1040.4 911 61.1
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 1.4e-301 1039.6 889 61.3
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 1.8e-301 1039.3 863 62.6
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 6.7e-301 1037.3 904 61.2
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 4.4e-300 1034.6 901 60.8
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 4.8e-299 1031.2 920 59.1
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 9.1e-298 1026.9 950 58.9
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 1.2e-297 1026.5 896 60.6
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 1.2e-297 1026.5 899 62.1
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 4.5e-297 1024.6 994 56.2
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.3e-296 1023.1 876 62.4
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.7e-296 1022.7 932 59.9
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 5.0e-296 1021.1 896 61.2
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 1.1e-295 1020.0 905 60.1
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 1.5e-295 1019.6 894 59.5
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 3.6e-294 1015.0 894 59.7
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.6e-294 1015.0 920 58.8
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.4e-293 1013.1 902 59.1
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 6.7e-293 1010.7 927 59.2
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 6.7e-293 1010.7 892 59.6
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.2e-292 1010.0 924 59.7
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 1.2e-292 1010.0 905 59.8
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 1.5e-292 1009.6 895 60.0
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 2.6e-292 1008.8 891 60.3
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 9.7e-292 1006.9 886 59.8
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 1.3e-291 1006.5 889 60.6
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 1.7e-291 1006.1 938 56.9
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 2.2e-291 1005.7 921 59.0
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 2.8e-291 1005.4 899 59.2
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 6.3e-291 1004.2 889 59.5
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 1.1e-290 1003.4 896 59.9
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 1.8e-290 1002.7 954 57.0
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 2.4e-290 1002.3 900 58.7
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 2.4e-290 1002.3 895 58.3
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 3.1e-290 1001.9 886 59.6
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 3.1e-290 1001.9 892 59.4
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 3.1e-290 1001.9 886 59.6
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 5.3e-290 1001.1 975 55.9
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 1.6e-289 999.6 965 57.4
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 3.5e-289 998.4 871 60.2
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 3.5e-289 998.4 871 60.2
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 1.3e-288 996.5 911 58.7
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.8e-288 995.0 900 58.4
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 7.2e-287 990.7 915 59.2
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 1.6e-286 989.6 1050 53.2
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.0e-284 982.6 876 59.0
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 3.1e-282 975.3 1040 53.6
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 7.0e-282 974.2 916 56.9
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 5.9e-281 971.1 1039 52.4
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 1.1e-279 966.8 895 58.3
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 7.2e-279 964.1 952 55.4
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 3.6e-278 961.8 895 57.8
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.4e-277 959.9 865 58.3
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 6.8e-277 957.6 879 57.2
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-274 949.9 917 57.0
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.6e-273 946.4 918 56.1
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.5e-271 939.9 812 61.0
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 5.6e-271 937.9 954 55.3
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 2.6e-268 929.1 782 62.5
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 4.4e-268 928.3 970 54.5
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.4e-268 928.3 918 56.1
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.3e-267 926.8 1025 51.1
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 2.2e-267 926.0 1136 49.0
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 1.8e-261 906.4 814 59.1
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 3.5e-257 892.1 802 58.7
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 3.4e-244 849.0 766 59.9
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 2.7e-241 839.3 830 53.9
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.7e-241 839.3 923 50.7
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.7e-240 836.6 824 54.9
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.4e-234 817.0 959 49.4
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.5e-231 806.2 678 64.0
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.5e-228 797.0 877 51.0
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 4.6e-225 785.4 721 57.8
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 6.9e-221 771.5 1112 42.4
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.5e-202 709.9 721 53.8
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.5e-188 662.9 662 57.1
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 5.2e-184 649.0 607 57.7
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 9.7e-175 618.2 410 73.2
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.7e-174 617.5 608 56.2
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 6.1e-153 545.8 731 46.1
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.0e-148 529.3 373 70.2
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.1e-144 518.5 419 64.4
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.3e-139 501.5 388 67.0
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 4.1e-133 479.9 464 58.2
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.1e-117 426.0 299 70.2
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.8e-113 413.3 687 40.3
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.4e-112 411.8 286 69.9
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 6.9e-112 409.5 308 66.2
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.5e-111 408.3 532 47.4
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 4.3e-106 390.2 536 44.8
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 4.6e-100 370.2 329 57.8
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.0e-94 352.4 362 54.7
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.2e-87 328.9 301 57.1
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 5.1e-83 313.5 221 71.0
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 4.9e-49 200.7 152 67.1
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 3.0e-43 181.4 130 66.9
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.8e-43 180.3 156 56.4
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.9e-39 167.2 163 55.2
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.5e-29 136.0 112 61.6
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.5e-29 136.0 108 65.7
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.6e-29 134.0 280 38.9
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 1.2e-26 126.3 105 58.1
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.5e-26 125.9 101 64.4
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.1e-23 115.5 87 58.6
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 3.6e-20 104.8 92 55.4
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.9e-16 92.4 281 28.8
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 3.0e-14 85.1 66 62.1
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 4.3e-13 81.3 48 77.1
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 9.6e-13 80.1 82 53.7
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.6e-12 79.3 61 62.3
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 2.1e-12 79.0 167 32.3
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.0e-11 74.7 62 59.7
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 6.8e-11 73.9 66 47.0
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 8.4e-09 67.0 68 50.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 5.4e-08 64.3 62 53.2
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 7.1e-08 63.9 47 59.6
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.1e-07 62.4 55 52.7
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.1e-07 62.4 55 52.7
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 1.7e-06 59.3 53 52.8
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.0e-06 58.5 52 57.7


User provided reference genes

Program Settings