Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 1.8e-113 412.5 204 100.0
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 8.0e-109 397.1 205 96.1
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 7.8e-96 354.0 204 87.7
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 6.6e-95 350.9 200 88.0
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 8.9e-92 340.5 202 84.2
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 7.1e-89 330.9 202 83.2
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 1.4e-84 316.6 200 77.0
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 1.2e-83 313.5 199 76.4
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 1.5e-83 313.2 200 77.5
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.6e-83 312.4 200 76.5
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 5.8e-83 311.2 198 76.8
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 9.9e-83 310.5 204 73.0
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 9.9e-83 310.5 201 75.6
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 1.7e-82 309.7 200 76.0
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.7e-82 309.7 200 75.0
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 2.9e-82 308.9 201 74.1
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 4.9e-82 308.1 200 75.0
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 4.9e-82 308.1 200 76.5
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 6.4e-82 307.8 196 76.0
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 8.4e-82 307.4 201 74.6
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 3.2e-81 305.4 204 72.5
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 5.4e-81 304.7 201 72.6
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.1e-81 304.3 191 78.5
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.1e-81 304.3 194 75.3
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 7.1e-81 304.3 201 74.1
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 9.2e-81 303.9 201 73.6
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 9.2e-81 303.9 204 73.0
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 1.2e-80 303.5 193 74.6
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.6e-80 303.1 201 73.1
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 3.5e-80 302.0 200 73.0
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.5e-80 302.0 200 75.0
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 1.0e-79 300.4 198 74.2
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 1.3e-79 300.1 204 70.6
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.3e-79 300.1 201 73.1
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.7e-79 299.7 201 72.6
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 1.7e-79 299.7 201 73.1
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 2.3e-79 299.3 200 73.0
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.3e-79 299.3 200 73.0
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 2.3e-79 299.3 200 73.5
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 3.0e-79 298.9 203 71.9
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 3.0e-79 298.9 194 73.2
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 3.9e-79 298.5 192 74.0
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 6.6e-79 297.7 201 72.1
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 6.6e-79 297.7 202 73.8
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.1e-78 297.0 194 73.7
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 1.5e-78 296.6 198 72.7
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 1.9e-78 296.2 195 72.3
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 1.9e-78 296.2 195 72.3
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 2.5e-78 295.8 199 71.9
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.3e-78 295.4 197 70.6
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 3.3e-78 295.4 187 74.3
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 7.3e-78 294.3 199 70.4
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 7.3e-78 294.3 193 73.6
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 9.6e-78 293.9 204 70.6
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 1.2e-77 293.5 205 71.2
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 4.7e-77 291.6 201 71.1
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 1.8e-76 289.7 199 70.4
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 1.8e-76 289.7 200 69.0
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 3.1e-76 288.9 199 71.4
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 4.0e-76 288.5 198 68.7
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 4.0e-76 288.5 205 68.3
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 5.2e-76 288.1 197 71.1
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 6.8e-76 287.7 186 71.0
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.2e-75 287.0 200 67.0
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.2e-75 287.0 198 68.2
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.4e-75 285.4 190 72.6
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 3.4e-75 285.4 201 70.1
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 4.4e-75 285.0 204 67.6
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 5.8e-75 284.6 200 67.0
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 5.8e-75 284.6 193 70.5
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 7.6e-75 284.3 196 70.4
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.3e-74 283.5 194 66.5
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.3e-74 283.5 193 71.0
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.7e-74 283.1 200 67.0
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 3.8e-74 282.0 191 69.1
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 4.9e-74 281.6 201 66.7
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 6.4e-74 281.2 194 66.0
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 8.4e-74 280.8 194 66.5
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.1e-73 280.4 200 68.5
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 1.4e-73 280.0 204 65.2
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.9e-73 279.6 194 67.5
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.9e-73 279.6 187 70.6
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 2.4e-73 279.3 194 65.5
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 4.2e-73 278.5 191 69.1
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 5.4e-73 278.1 192 67.2
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 5.4e-73 278.1 197 69.5
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 5.4e-73 278.1 182 71.4
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 7.1e-73 277.7 194 68.6
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 7.1e-73 277.7 206 65.0
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 1.6e-72 276.6 200 67.5
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 3.5e-72 275.4 200 64.5
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 4.6e-72 275.0 189 66.7
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 4.6e-72 275.0 189 66.7
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 4.6e-72 275.0 198 64.6
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 2.3e-71 272.7 189 66.1
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 2.3e-71 272.7 189 66.7
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 6.6e-71 271.2 193 70.5
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 1.5e-70 270.0 183 70.5
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 1.9e-70 269.6 199 67.8
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 2.5e-70 269.2 192 66.7
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 7.3e-70 267.7 198 65.7
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 9.6e-70 267.3 202 66.8
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 2.1e-69 266.2 202 68.3
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 2.8e-69 265.8 184 67.9
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.8e-69 265.0 199 66.8
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 3.1e-68 262.3 197 66.0
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 2.0e-67 259.6 198 64.6
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.6e-67 259.2 160 78.8
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 8.4e-66 254.2 192 62.5
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 8.4e-66 254.2 193 63.2
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 1.1e-65 253.8 192 64.6
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 5.4e-65 251.5 159 78.6
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 5.4e-65 251.5 156 75.6
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 7.9e-64 247.7 190 61.1
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 8.1e-61 237.7 161 68.9
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 8.1e-61 237.7 155 71.0
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 3.5e-56 222.2 197 58.9
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 6.7e-55 218.0 209 56.5
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.8e-52 209.9 193 55.4
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 6.5e-50 201.4 136 71.3
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.2e-48 197.2 179 48.6
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 1.0e-47 194.1 132 70.5
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.7e-46 188.3 151 64.9
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 2.8e-45 186.0 185 47.0
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 4.6e-40 168.7 127 60.6
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.4e-36 157.1 102 73.5
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.1e-36 156.0 95 80.0
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.2e-34 149.8 104 66.3
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.2e-33 145.6 103 68.0
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 3.6e-32 142.5 102 67.6
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 8.8e-31 137.9 93 71.0
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.4e-27 125.9 191 39.8
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.9e-24 114.8 96 58.3
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 2.2e-21 106.7 201 32.8
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 2.8e-21 106.3 168 35.7
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 5.3e-20 102.1 197 31.5
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 5.3e-20 102.1 188 31.4
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 9.1e-20 101.3 199 31.7
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 1.2e-19 100.9 200 32.5
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 3.5e-19 99.4 188 33.5
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 3.5e-19 99.4 188 33.5
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.3e-18 97.4 188 33.0
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.5e-17 94.0 189 31.7
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.9e-17 93.6 176 34.1
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.8e-15 87.0 84 54.8
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 3.0e-15 86.3 54 79.6
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 5.2e-15 85.5 199 30.2
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.2e-14 84.3 214 29.0
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 1.3e-13 80.9 120 35.0
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 1.7e-13 80.5 136 34.6
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 2.2e-13 80.1 115 38.3
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 3.7e-13 79.3 68 60.3
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 1.4e-12 77.4 100 50.0
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 1.6e-11 73.9 144 33.3
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.2e-10 70.1 56 57.1
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.8e-10 69.3 56 62.5
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 9.4e-09 64.7 37 81.1
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 2.7e-08 63.2 82 41.5
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 2.3e-07 60.1 118 32.2
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.0e-07 59.7 50 58.0


User provided reference genes

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