Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4478 Papaver somniferum HOM05D002970 ORTHO05D007037 8.8e-285 983.0 527 100.0
PSO063G0226 Papaver somniferum HOM05D002970 ORTHO05D007037 5.8e-252 874.0 508 93.5
PSO013G0304 Papaver somniferum HOM05D002970 ORTHO05D007037 1.9e-250 869.0 507 93.5
PSO063G6630 Papaver somniferum HOM05D002970 ORTHO05D007037 1.3e-211 740.0 459 90.2
TAR371G0312 Trochodendron aralioides HOM05D002970 ORTHO05D007037 1.9e-90 337.4 469 44.6
Dinv14772 Davidia involucrata HOM05D002970 ORTHO05D007037 1.0e-78 298.5 526 39.7
Dinv11020 Davidia involucrata HOM05D002970 ORTHO05D007037 7.2e-77 292.4 454 42.7
CSS0037497 Camellia sinensis var. sinensis HOM05D002970 ORTHO05D007037 3.6e-76 290.0 474 40.7
MD13G1107800 Malus domestica HOM05D002970 ORTHO05D007037 7.9e-76 288.9 403 44.4
Aqoxy5G03607 Aquilegia oxysepala HOM05D002970 ORTHO05D007037 3.0e-75 287.0 434 42.9
Atru.chr11.2207 Acer truncatum HOM05D002970 ORTHO05D007037 1.9e-69 267.7 464 41.4
Prupe.1G238600 Prunus persica HOM05D002970 ORTHO05D007037 5.5e-69 266.2 424 41.5
MD16G1107700 Malus domestica HOM05D002970 ORTHO05D007037 4.0e-67 260.0 427 41.0
Ciclev10030479m.g Citrus clementina HOM05D002970 ORTHO05D007037 2.6e-66 257.3 459 39.0
PSO478G2615 Papaver somniferum HOM05D002970 ORTHO05D007037 2.6e-66 257.3 293 58.7
QL03p055853 Quercus lobata HOM05D002970 ORTHO05D007037 1.3e-65 255.0 429 41.7
Actinidia08107 Actinidia chinensis HOM05D002970 ORTHO05D007037 1.6e-63 248.1 450 38.0
TWI36G0141 Tripterygium wilfordii HOM05D002970 ORTHO05D007037 1.9e-61 241.1 518 36.9
Lj3A1063T61 Lonicera japonica HOM05D002970 ORTHO05D007037 6.1e-60 236.1 483 36.4
Ah.03g133670 Amaranthus hybridus HOM05D002970 ORTHO05D007037 3.0e-59 233.8 504 35.3
AUR62005543 Chenopodium quinoa HOM05D002970 ORTHO05D007037 1.2e-58 231.9 454 37.0
FvH4_4g24950 Fragaria vesca HOM05D002970 ORTHO05D007037 2.6e-58 230.7 389 38.8
FAN12G3366 Fragaria x ananassa HOM05D002970 ORTHO05D007037 7.5e-58 229.2 389 38.6
MBI11_g22624_MAGBIO Magnolia biondii HOM05D002970 ORTHO05D007037 2.2e-57 227.6 517 36.6
RcHm_v2.0_Chr4g0431991 Rosa chinensis HOM05D002970 ORTHO05D007037 3.7e-57 226.9 389 39.1
CsaV3_5G030650 Cucumis sativus L. HOM05D002970 ORTHO05D007037 1.1e-56 225.3 511 35.0
AUR62024190 Chenopodium quinoa HOM05D002970 ORTHO05D007037 1.2e-55 221.9 516 33.5
Lalb_Chr23g0277811 Lupinus albus HOM05D002970 ORTHO05D007037 1.6e-55 221.5 526 35.0
FAN22G0223 Fragaria x ananassa HOM05D002970 ORTHO05D007037 4.5e-55 219.9 390 37.9
Ca_25118_v3 Cicer arietinum L. HOM05D002970 ORTHO05D007037 1.3e-54 218.4 498 35.9
EL10Ac6g15185 Beta vulgaris HOM05D002970 ORTHO05D007037 6.5e-54 216.1 499 34.7
Thecc.02G269400 Theobroma cacao HOM05D002970 ORTHO05D007037 8.5e-54 215.7 305 44.9
Migut.K00673 Erythranthe guttata HOM05D002970 ORTHO05D007037 4.2e-53 213.4 484 33.5
Nitab4.5_0007823g0020 Nicotiana tabacum HOM05D002970 ORTHO05D007037 9.4e-53 212.2 450 35.8
DCAR_007026 Daucus carota HOM05D002970 ORTHO05D007037 1.2e-52 211.8 523 32.7
PGR119G0825 Punica granatum HOM05D002970 ORTHO05D007037 3.6e-52 210.3 498 32.9
COL.COLO4_23553 Corchorus olitorius HOM05D002970 ORTHO05D007037 6.1e-52 209.5 307 43.3
Nitab4.5_0000041g0280 Nicotiana tabacum HOM05D002970 ORTHO05D007037 8.0e-52 209.1 498 35.9
CAN.G49.7 Capsicum annuum HOM05D002970 ORTHO05D007037 1.4e-51 208.4 451 35.9
Potri.010G052600 Populus trichocarpa HOM05D002970 ORTHO05D007037 3.0e-51 207.2 377 39.8
Sed0018065 Sechium edule HOM05D002970 ORTHO05D007037 4.0e-51 206.8 423 35.7
Duzib251G0656 Durio zibethinus HOM05D002970 ORTHO05D007037 6.8e-51 206.1 305 43.6
Glyma.11G246000 Glycine max HOM05D002970 ORTHO05D007037 7.5e-50 202.6 506 33.4
Lj6g0025430 Lotus japonicus HOM05D002970 ORTHO05D007037 1.3e-49 201.8 508 33.9
CANSAT01G0097 Cannabis sativa HOM05D002970 ORTHO05D007037 3.7e-49 200.3 506 34.2
Manes.12G018200 Manihot esculenta HOM05D002970 ORTHO05D007037 4.9e-49 199.9 366 38.8
ECA246G5228 Erigeron canadensis HOM05D002970 ORTHO05D001380 6.3e-49 199.5 458 33.4
Glyma.18G011200 Glycine max HOM05D002970 ORTHO05D007037 4.1e-48 196.8 502 33.1
Gohir.A03G130800 Gossypium hirsutum HOM05D002970 ORTHO05D007037 4.1e-48 196.8 305 42.6
Sopen05g009230 Solanum pennellii HOM05D002970 ORTHO05D007037 1.2e-47 195.3 516 32.9
CDE09G1221 Ceratophyllum demersum HOM05D002970 ORTHO05D007037 3.5e-47 193.7 486 34.2
ClCG05G026190 Citrullus lanatus HOM05D002970 ORTHO05D007037 7.7e-47 192.6 507 32.7
Gohir.D02G154501 Gossypium hirsutum HOM05D002970 ORTHO05D007037 7.7e-47 192.6 309 42.1
Sc11g0000790 Simmondsia chinensis HOM05D002970 ORTHO05D007037 1.0e-46 192.2 257 48.2
Medtr3g086150 Medicago truncatula HOM05D002970 ORTHO05D007037 2.3e-46 191.0 294 44.2
Gorai.005G173600 Gossypium raimondii HOM05D002970 ORTHO05D007037 8.6e-46 189.1 309 41.4
FAN07G0847 Fragaria x ananassa HOM05D002970 ORTHO05D007037 1.1e-45 188.7 358 35.8
Solyc05g014200.3 Solanum lycopersicum HOM05D002970 ORTHO05D007037 1.1e-45 188.7 517 32.7
THA.LOC104825534 Tarenaya hassleriana HOM05D002970 ORTHO05D007037 1.2e-44 185.3 425 35.1
MSTRG.540 Avicennia marina HOM05D002970 ORTHO05D007037 2.1e-44 184.5 444 32.7
Peaxi162Scf00128g00725 Petunia axillaris HOM05D002970 ORTHO05D007037 3.6e-44 183.7 354 38.7
Psat5g093520 Pisum sativum HOM05D002970 ORTHO05D007037 3.6e-44 183.7 336 39.9
CDE02G3172 Ceratophyllum demersum HOM05D002970 ORTHO05D007037 4.7e-44 183.3 516 32.2
MELO3C011904.2 Cucumis melo HOM05D002970 ORTHO05D007037 6.1e-44 183.0 511 32.7
Phvul.001G257700 Phaseolus vulgaris HOM05D002970 ORTHO05D007037 6.1e-44 183.0 511 31.9
HanXRQChr12g0372101 Helianthus annuus HOM05D002970 ORTHO05D007037 5.2e-43 179.9 495 30.7
Gohir.D01G153501 Gossypium hirsutum HOM05D002970 ORTHO05D007037 1.2e-42 178.7 274 42.0
Sabra10G0017800 Salix brachista HOM05D002970 ORTHO05D007037 3.4e-42 177.2 243 48.1
PSO478G1005 Papaver somniferum HOM05D002970 ORTHO05D007037 7.5e-42 176.0 155 65.8
Cc11_g16290 Coffea canephora HOM05D002970 ORTHO05D007037 2.2e-41 174.5 505 31.5
DCAR_031175 Daucus carota HOM05D002970 ORTHO05D007037 3.7e-41 173.7 450 31.1
Lsat_1_v5_gn_3_29221 Lactuca sativa HOM05D002970 ORTHO05D007037 3.7e-41 173.7 440 31.1
CiPaw.05G175500 Carya illinoinensis HOM05D002970 ORTHO05D007037 4.9e-41 173.3 527 32.1
Gohir.A01G156751 Gossypium hirsutum HOM05D002970 ORTHO05D007037 6.4e-41 172.9 305 38.0
EL10As2g23227 Beta vulgaris HOM05D002970 ORTHO05D007037 1.8e-40 171.4 453 31.6
arahy.Tifrunner.gnm1.ann1.CS70SB Arachis hypogaea HOM05D002970 ORTHO05D007037 2.4e-40 171.0 245 47.3
Thhalv10006539m.g Eutrema salsugineum HOM05D002970 ORTHO05D007037 2.7e-39 167.5 371 33.2
Haze_12310 Corylus avellana HOM05D002970 ORTHO05D007037 4.6e-39 166.8 469 32.4
Sed0022070 Sechium edule HOM05D002970 ORTHO05D007037 4.6e-39 166.8 478 31.2
HPP92_009917 Vanilla planifolia HOM05D002970 ORTHO05D007037 4.6e-39 166.8 389 36.5
Sp1g23340 Schrenkiella parvula HOM05D002970 ORTHO05D007037 7.8e-39 166.0 300 37.0
TPR.G14240 Trifolium pratense HOM05D002970 ORTHO05D007037 7.8e-39 166.0 421 33.5
A09p38780 Brassica napus HOM05D002970 ORTHO05D007037 5.0e-38 163.3 276 38.8
CARHR026670 Cardamine hirsuta HOM05D002970 ORTHO05D007037 8.6e-38 162.5 352 33.0
BraA09t39386Z Brassica rapa HOM05D002970 ORTHO05D007037 1.1e-37 162.2 276 38.4
ECA233G2191 Erigeron canadensis HOM05D002970 ORTHO05D007037 3.3e-37 160.6 507 29.0
AT1G24460 Arabidopsis thaliana HOM05D002970 ORTHO05D007037 4.3e-37 160.2 317 36.6
BolC5t31302H Brassica oleracea HOM05D002970 ORTHO05D007037 4.3e-37 160.2 278 37.8
SGA_v2.0_scaffold100G29587 Striga asiatica HOM05D002970 ORTHO05D007037 5.6e-37 159.8 301 37.5
BcaC05g26524 Brassica carinata HOM05D002970 ORTHO05D007037 9.5e-37 159.1 275 37.8
A08p26560 Brassica napus HOM05D002970 ORTHO05D007037 3.6e-36 157.1 267 39.0
Duzib268G1442 Durio zibethinus HOM05D002970 ORTHO05D007037 8.0e-36 156.0 434 32.0
C05p25820 Brassica napus HOM05D002970 ORTHO05D007037 1.0e-35 155.6 275 37.1
BcaB03g12058 Brassica carinata HOM05D002970 ORTHO05D007037 2.3e-35 154.5 395 30.4
BolC3t19641H Brassica oleracea HOM05D002970 ORTHO05D007037 3.1e-35 154.1 267 39.7
BraA08t34608Z Brassica rapa HOM05D002970 ORTHO05D007037 8.9e-35 152.5 267 38.6
Rhsim12G0037200 Rhododendron simsii HOM05D002970 ORTHO05D007037 8.9e-35 152.5 531 28.2
VMungo1383G0211 Vigna mungo HOM05D002970 ORTHO05D007037 1.5e-34 151.8 500 29.2
C03p73460 Brassica napus HOM05D002970 ORTHO05D007037 3.4e-34 150.6 267 39.0
Lsat_1_v5_gn_8_150420 Lactuca sativa HOM05D002970 ORTHO05D007037 2.9e-33 147.5 495 28.5
arahy.Tifrunner.gnm1.ann1.9A7Q93 Arachis hypogaea HOM05D002970 ORTHO05D007037 8.3e-33 146.0 367 35.7
Oeu049169.1 Olea europaea HOM05D002970 ORTHO05D007037 1.9e-32 144.8 451 31.0
unitig_35.g30193 Utricularia gibba HOM05D002970 ORTHO05D007037 7.8e-31 139.4 448 29.7
Carub.0001s2565 Capsella rubella HOM05D002970 ORTHO05D007037 1.0e-30 139.0 241 37.8
BcaC05g26716 Brassica carinata HOM05D002970 ORTHO05D007037 1.6e-28 131.7 240 35.4
BcaC05g26719 Brassica carinata HOM05D002970 ORTHO05D007037 1.8e-27 128.3 269 33.1
Zm00001eb246290 Zea mays HOM05D002970 ORTHO05D007037 7.5e-26 122.9 352 30.1
Gorai.002G190100 Gossypium raimondii HOM05D002970 ORTHO05D007037 1.3e-25 122.1 461 28.2
unitig_749.g13284 Utricularia gibba HOM05D002970 ORTHO05D007037 2.2e-25 121.3 480 27.1
Eucgr.H04698 Eucalyptus grandis HOM05D002970 ORTHO05D007037 2.4e-24 117.9 145 49.0
SEGI_07626 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 2.4e-24 117.9 466 25.1
SEGI_37710 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 2.4e-24 117.9 466 25.1
SEGI_23098 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 1.3e-22 112.1 485 25.2
GSVIVG01010295001 Vitis vinifera HOM05D002970 ORTHO05D007037 1.7e-22 111.7 363 30.3
Actinidia30693 Actinidia chinensis HOM05D002970 ORTHO05D007037 2.3e-22 111.3 111 57.7
Aa31LG4G12160 Aethionema arabicum HOM05D002970 ORTHO05D007037 9.5e-21 105.9 397 28.5
AL1G40480 Arabidopsis lyrata HOM05D002970 ORTHO05D007037 1.3e-17 95.5 416 24.5
Cpa.g.sc86.7 Carica papaya HOM05D002970 ORTHO05D007037 1.9e-16 91.7 529 26.5
MBI16_g05842_MAGBIO Magnolia biondii HOM05D005366 ORTHO05D006323 7.8e-15 86.3 444 24.5
CAN.G508.16 Capsicum annuum HOM05D002970 ORTHO05D007037 3.6e-12 77.4 94 53.2
Aqoxy7G02854 Aquilegia oxysepala HOM05D005366 ORTHO05D006323 1.5e-10 72.0 214 30.8
Lj5g0008306 Lotus japonicus HOM05D005366 ORTHO05D006323 2.6e-10 71.2 396 24.7
Duzib168G0091 Durio zibethinus HOM05D005366 ORTHO05D006323 3.4e-10 70.9 338 26.3
Medtr1g009610 Medicago truncatula HOM05D005366 ORTHO05D006323 4.9e-09 67.0 364 26.1
Phvul.001G060300 Phaseolus vulgaris HOM05D005366 ORTHO05D006323 4.9e-09 67.0 363 24.8
Gohir.A05G063400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 6.4e-09 66.6 332 25.6
TPR.G21359 Trifolium pratense HOM05D005366 ORTHO05D006323 6.4e-09 66.6 380 24.7
Glyma.14G135900 Glycine max HOM05D005366 ORTHO05D006323 1.1e-08 65.9 365 25.5
Manes.16G134600 Manihot esculenta HOM05D005366 ORTHO05D006323 1.1e-08 65.9 282 26.6
Glyma.17G197200 Glycine max HOM05D005366 ORTHO05D006323 2.4e-08 64.7 368 25.3
Zm00001eb232290 Zea mays HOM05D005366 ORTHO05D006323 2.4e-08 64.7 374 27.8
CDE07G1832 Ceratophyllum demersum HOM05D005366 ORTHO05D006323 5.4e-08 63.5 190 28.4
Gohir.D05G066000 Gossypium hirsutum HOM05D005366 ORTHO05D006323 5.4e-08 63.5 122 40.2
Gorai.009G066800 Gossypium raimondii HOM05D005366 ORTHO05D006323 5.4e-08 63.5 122 40.2
Potri.018G008600 Populus trichocarpa HOM05D005366 ORTHO05D006323 5.4e-08 63.5 263 26.6
ATR0580G390 Amborella trichopoda HOM05D005366 ORTHO05D006323 7.1e-08 63.2 447 25.3
PSO063G0316 Papaver somniferum HOM05D005366 ORTHO05D006323 7.1e-08 63.2 181 31.5
vmacro00028 Vaccinium macrocarpon HOM05D005366 ORTHO05D006323 7.1e-08 63.2 117 39.3
Hma1.2p1_0272F.1_g109220 Hydrangea macrophylla HOM05D005366 ORTHO05D006323 1.2e-07 62.4 274 27.4
Nn8g40726 Nelumbo nucifera HOM05D005366 ORTHO05D006323 1.2e-07 62.4 290 27.2
Psat0s839g0040 Pisum sativum HOM05D005366 ORTHO05D006323 1.6e-07 62.0 374 24.3
Actinidia06431 Actinidia chinensis HOM05D005366 ORTHO05D006323 2.1e-07 61.6 115 41.7
Cc08_g06500 Coffea canephora HOM05D005366 ORTHO05D006323 2.7e-07 61.2 328 25.6
Mapoly0090s0030 Marchantia polymorpha HOM05D052710 ORTHO05D006323 2.7e-07 61.2 311 25.7
Sed0008947 Sechium edule HOM05D005366 ORTHO05D006323 3.5e-07 60.8 296 25.7
QL12p025430 Quercus lobata HOM05D005366 ORTHO05D006323 4.6e-07 60.5 333 26.7
Solyc08g006420.3 Solanum lycopersicum HOM05D005366 ORTHO05D006323 4.6e-07 60.5 331 23.6
VMungo0647G1874 Vigna mungo HOM05D005366 ORTHO05D006323 6.0e-07 60.1 345 26.1
Atru.chr7.2660 Acer truncatum HOM05D005366 ORTHO05D006323 7.8e-07 59.7 348 25.0
Ciclev10007223m.g Citrus clementina HOM05D005366 ORTHO05D006323 1.0e-06 59.3 374 24.1
AT4G31570 Arabidopsis thaliana HOM05D005366 ORTHO05D006323 1.3e-06 58.9 415 25.5
Rhsim11G0005000 Rhododendron simsii HOM05D005366 ORTHO05D006323 1.3e-06 58.9 117 37.6
Thecc.09G008500 Theobroma cacao HOM05D005366 ORTHO05D006323 1.3e-06 58.9 324 25.6
HPP92_018359 Vanilla planifolia HOM05D005366 ORTHO05D006323 1.3e-06 58.9 329 24.0
EL10Ac2g02416 Beta vulgaris HOM05D005366 ORTHO05D006323 1.7e-06 58.5 118 38.1
Dinv04518 Davidia involucrata HOM05D005366 ORTHO05D006323 1.7e-06 58.5 406 22.7
Haze_21759 Corylus avellana HOM05D005366 ORTHO05D006323 2.3e-06 58.2 350 23.4
Lj7C748G6 Lonicera japonica HOM05D005366 ORTHO05D006323 2.3e-06 58.2 117 38.5
Sopen08g002360 Solanum pennellii HOM05D005366 ORTHO05D006323 2.3e-06 58.2 247 27.9
Ah.12g061220 Amaranthus hybridus HOM05D005366 ORTHO05D006323 3.0e-06 57.8 396 22.2
Lsat_1_v5_gn_5_61021 Lactuca sativa HOM05D005366 ORTHO05D006323 3.0e-06 57.8 418 22.2
AUR62020289 Chenopodium quinoa HOM05D005366 ORTHO05D006323 3.9e-06 57.4 235 27.7
CsaV3_3G047150 Cucumis sativus L. HOM05D005366 ORTHO05D006323 5.1e-06 57.0 190 27.4
Peaxi162Scf00045g00173 Petunia axillaris HOM05D005366 ORTHO05D006323 5.1e-06 57.0 244 28.7
CARHR239450 Cardamine hirsuta HOM05D005366 ORTHO05D006323 6.6e-06 56.6 353 24.9
COL.COLO4_19020 Corchorus olitorius HOM05D005366 ORTHO05D006323 6.6e-06 56.6 360 23.6
Gohir.A07G002100 Gossypium hirsutum HOM05D005366 ORTHO05D006323 6.6e-06 56.6 95 40.0
Gohir.D07G002400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 6.6e-06 56.6 95 40.0
Gorai.001G002300 Gossypium raimondii HOM05D005366 ORTHO05D006323 6.6e-06 56.6 95 40.0
TWI63G1827 Tripterygium wilfordii HOM05D005366 ORTHO05D006323 6.6e-06 56.6 434 23.0
FAN15G0510 Fragaria x ananassa HOM05D005366 ORTHO05D006323 8.7e-06 56.2 358 24.3
Prupe.1G459000 Prunus persica HOM05D005366 ORTHO05D006323 8.7e-06 56.2 263 26.6
TAR625G0224 Trochodendron aralioides HOM05D005366 ORTHO05D006323 8.7e-06 56.2 376 23.4


User provided reference genes

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