Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.5e-147 526.2 266 100.0
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 4.7e-133 478.0 266 91.7
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 1.2e-85 320.5 270 62.2
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 2.2e-82 309.7 271 58.7
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 1.1e-78 297.4 271 58.7
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 4.0e-76 288.9 262 60.3
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 3.4e-75 285.8 272 58.5
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 9.9e-75 284.3 260 60.0
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 3.2e-73 279.3 272 57.7
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 2.7e-72 276.2 263 58.6
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 3.9e-71 272.3 270 55.6
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 6.6e-71 271.6 279 52.7
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 1.1e-70 270.8 275 54.9
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 1.5e-70 270.4 205 66.8
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 1.9e-70 270.0 191 69.6
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 2.5e-70 269.6 203 66.5
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 4.3e-70 268.9 201 66.2
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 7.3e-70 268.1 257 57.6
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 2.1e-69 266.5 275 54.9
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 4.7e-69 265.4 198 62.6
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 6.2e-69 265.0 206 62.6
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 6.2e-69 265.0 275 54.2
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 1.1e-68 264.2 265 52.5
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 1.1e-68 264.2 269 52.0
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 1.1e-68 264.2 268 54.1
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 1.1e-68 264.2 274 53.6
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 1.4e-68 263.8 204 64.2
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 1.8e-68 263.5 220 61.8
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 6.9e-68 261.5 215 60.9
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 9.0e-68 261.2 197 64.5
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 2.0e-67 260.0 277 53.1
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 2.0e-67 260.0 269 50.9
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 3.4e-67 259.2 178 69.7
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 5.8e-67 258.5 231 58.4
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 7.6e-67 258.1 199 60.8
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 9.9e-67 257.7 199 60.3
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 1.3e-66 257.3 216 59.3
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.7e-66 256.9 199 60.3
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 1.7e-66 256.9 271 51.3
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 4.9e-66 255.4 261 53.3
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 6.4e-66 255.0 205 64.4
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 8.4e-66 254.6 203 62.1
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 8.4e-66 254.6 200 60.5
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 8.4e-66 254.6 206 60.7
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 1.1e-65 254.2 206 63.1
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 1.1e-65 254.2 192 65.6
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 1.4e-65 253.8 228 57.0
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 2.4e-65 253.1 269 53.2
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 3.2e-65 252.7 205 62.9
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 3.2e-65 252.7 274 51.5
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 4.2e-65 252.3 269 51.7
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 5.4e-65 251.9 242 55.4
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 5.4e-65 251.9 275 51.3
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 5.4e-65 251.9 192 65.1
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 1.6e-64 250.4 275 53.5
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 1.6e-64 250.4 203 62.1
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 4.6e-64 248.8 215 60.0
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 6.0e-64 248.4 198 62.1
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 7.8e-64 248.1 203 62.1
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 1.3e-63 247.3 269 50.9
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 1.7e-63 246.9 198 61.6
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 3.0e-63 246.1 198 59.1
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 3.9e-63 245.7 205 57.6
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 3.9e-63 245.7 198 59.1
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 3.9e-63 245.7 248 52.0
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 3.3e-62 242.7 197 58.9
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 5.6e-62 241.9 223 56.5
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 1.3e-61 240.7 195 57.9
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 1.6e-61 240.4 225 56.9
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 6.2e-61 238.4 213 55.9
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 1.1e-60 237.7 200 58.0
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 1.4e-60 237.3 291 50.9
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 1.8e-60 236.9 273 47.6
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 3.1e-60 236.1 202 57.9
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 4.0e-60 235.7 268 50.0
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 6.9e-60 235.0 204 58.8
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 4.5e-59 232.3 206 55.8
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 9.9e-59 231.1 190 58.9
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 9.9e-59 231.1 261 46.7
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 1.3e-58 230.7 191 61.8
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 1.7e-58 230.3 212 53.8
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 3.8e-58 229.2 190 58.4
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 3.8e-58 229.2 190 58.9
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 1.9e-57 226.9 190 56.8
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 2.4e-57 226.5 190 57.4
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 4.2e-57 225.7 191 54.5
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 9.3e-57 224.6 275 47.6
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 1.6e-56 223.8 200 59.5
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 1.0e-55 221.1 233 50.6
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 5.1e-55 218.8 154 70.8
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 1.1e-54 217.6 190 59.5
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 1.5e-54 217.2 167 62.3
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 6.2e-53 211.8 233 49.8
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 6.9e-52 208.4 270 46.7
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 1.2e-51 207.6 154 66.2
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 1.2e-51 207.6 151 66.9
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 2.0e-51 206.8 153 69.3
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 2.4e-49 199.9 155 61.3
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 7.1e-49 198.4 180 60.0
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 6.7e-47 191.8 144 63.9
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 2.8e-45 186.4 177 56.5
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 1.4e-44 184.1 137 65.7
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 4.0e-44 182.6 204 45.6
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.4e-41 174.1 163 55.8
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 1.9e-41 173.7 145 58.6
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 1.5e-38 164.1 114 71.1
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 4.3e-38 162.5 189 42.3
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 5.7e-38 162.2 154 57.1
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 3.1e-36 156.4 133 54.9
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 1.2e-35 154.5 113 64.6
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 1.3e-34 151.0 191 41.4
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 3.0e-31 139.8 198 39.4
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.1e-24 117.1 200 36.5
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.1e-24 117.1 200 36.5
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 7.4e-22 108.6 86 62.8
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 3.1e-20 103.2 124 40.3
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 7.7e-19 98.6 100 56.0
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 3.8e-18 96.3 125 43.2
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 2.5e-17 93.6 64 71.9
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 5.5e-17 92.4 157 37.6
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 2.1e-16 90.5 211 30.8
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 2.2e-13 80.5 104 43.3
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 7.2e-09 65.5 119 39.5
SalBow1G6520 Salvia bowleyana HOM05D001890 ORTHO05D008163 2.7e-08 63.5 89 43.8
PRCOL_00006387 Prasinoderma coloniale HOM05D001890 ORTHO05D008163 1.5e-06 57.8 215 23.7


User provided reference genes

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