Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.4e-56 222.6 108 100.0
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 3.5e-55 218.0 108 98.1
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 4.8e-44 181.0 105 81.0
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 6.2e-44 180.6 99 84.8
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 6.2e-44 180.6 100 85.0
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 1.4e-43 179.5 99 85.9
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 3.1e-43 178.3 104 80.8
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 3.1e-43 178.3 99 84.8
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 4.0e-43 177.9 99 82.8
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 4.0e-43 177.9 100 83.0
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 4.0e-43 177.9 100 83.0
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 5.3e-43 177.6 99 84.8
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 6.9e-43 177.2 99 84.8
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 6.9e-43 177.2 99 81.8
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 6.9e-43 177.2 99 81.8
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 6.9e-43 177.2 105 79.0
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.2e-42 176.4 99 82.8
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.2e-42 176.4 99 83.8
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 1.5e-42 176.0 99 81.8
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.5e-42 176.0 99 81.8
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.0e-42 175.6 99 80.8
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 2.6e-42 175.3 100 80.0
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 3.4e-42 174.9 99 82.8
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 4.5e-42 174.5 100 81.0
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 4.5e-42 174.5 109 77.1
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 5.8e-42 174.1 100 80.0
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 5.8e-42 174.1 99 80.8
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 7.6e-42 173.7 99 79.8
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 7.6e-42 173.7 100 79.0
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 1.7e-41 172.6 100 78.0
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 2.2e-41 172.2 99 81.8
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 2.2e-41 172.2 100 80.0
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 2.9e-41 171.8 101 77.2
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 2.9e-41 171.8 99 80.8
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 3.8e-41 171.4 99 80.8
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 3.8e-41 171.4 100 79.0
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 4.9e-41 171.0 99 79.8
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 6.5e-41 170.6 99 78.8
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 6.5e-41 170.6 99 80.8
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 6.5e-41 170.6 99 80.8
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 6.5e-41 170.6 99 79.8
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 6.5e-41 170.6 99 79.8
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 6.5e-41 170.6 99 80.8
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 8.4e-41 170.2 100 79.0
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 1.1e-40 169.9 105 75.2
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 1.1e-40 169.9 100 77.0
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 1.1e-40 169.9 100 79.0
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.4e-40 169.5 99 79.8
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 1.9e-40 169.1 99 79.8
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 1.9e-40 169.1 99 78.8
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.9e-40 169.1 108 75.9
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 2.5e-40 168.7 111 73.0
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 2.5e-40 168.7 110 72.7
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 2.5e-40 168.7 109 74.3
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.5e-40 168.7 105 75.2
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 3.2e-40 168.3 100 77.0
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 3.2e-40 168.3 99 79.8
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 4.2e-40 167.9 105 73.3
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 4.2e-40 167.9 100 78.0
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 5.5e-40 167.5 103 74.8
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 9.3e-40 166.8 110 70.9
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 9.3e-40 166.8 99 78.8
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 9.3e-40 166.8 99 78.8
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 9.3e-40 166.8 99 78.8
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.2e-39 166.4 106 69.8
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 1.6e-39 166.0 109 72.5
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 1.6e-39 166.0 103 77.7
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 1.6e-39 166.0 93 83.9
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.6e-39 166.0 100 75.0
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 2.1e-39 165.6 110 70.9
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 2.1e-39 165.6 100 76.0
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 2.7e-39 165.2 100 77.0
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 2.7e-39 165.2 103 75.7
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 2.7e-39 165.2 99 78.8
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 3.5e-39 164.9 110 70.9
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 3.5e-39 164.9 92 81.5
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 4.6e-39 164.5 99 75.8
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 4.6e-39 164.5 100 76.0
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 6.0e-39 164.1 99 77.8
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 7.9e-39 163.7 100 75.0
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 1.0e-38 163.3 99 76.8
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 1.8e-38 162.5 106 69.8
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 1.8e-38 162.5 106 69.8
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 1.8e-38 162.5 98 74.5
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 3.0e-38 161.8 98 76.5
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 3.9e-38 161.4 106 68.9
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 3.9e-38 161.4 106 68.9
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 3.9e-38 161.4 110 70.9
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 6.7e-38 160.6 100 72.0
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 6.7e-38 160.6 106 67.9
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 1.1e-37 159.8 111 68.5
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 1.5e-37 159.5 98 70.4
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 2.5e-37 158.7 92 80.4
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 1.3e-36 156.4 99 71.7
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.6e-36 156.0 92 79.3
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 3.1e-35 151.8 100 66.0
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 3.8e-33 144.8 100 63.0
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 6.5e-33 144.1 99 66.7
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 1.6e-31 139.4 100 57.0
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 7.9e-31 137.1 98 62.2
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 2.3e-30 135.6 92 66.3
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 2.3e-30 135.6 98 61.2
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 7.4e-29 130.6 102 52.0
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 9.7e-29 130.2 72 86.1
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.7e-28 129.4 72 81.9
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 3.7e-28 128.3 82 73.2
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.4e-27 126.3 69 84.1
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 3.1e-27 125.2 71 81.7
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 2.6e-26 122.1 73 75.3
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 4.5e-26 121.3 72 77.8
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 5.9e-26 120.9 76 72.4
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.7e-25 119.4 99 51.5
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.2e-25 119.0 73 76.7
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 2.9e-25 118.6 72 76.4
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 3.8e-25 118.2 72 75.0
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 5.5e-24 114.4 80 63.8
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 5.5e-24 114.4 76 63.2
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 5.7e-21 104.4 69 66.7
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 2.0e-18 95.9 64 70.3
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 2.6e-18 95.5 102 50.0
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 3.8e-17 91.7 75 61.3
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 3.1e-11 72.0 54 57.4
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 3.2e-08 62.0 32 90.6
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.6e-07 59.7 40 65.0
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 1.0e-06 57.0 43 67.4
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 1.0e-06 57.0 32 78.1
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 1.8e-06 56.2 42 59.5


User provided reference genes

Program Settings