Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 1.6e-129 466.1 238 100.0
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 6.9e-128 460.7 238 98.7
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 7.6e-111 404.1 235 83.8
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 2.2e-110 402.5 235 83.4
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 2.5e-109 399.1 235 83.0
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.1e-108 396.0 236 83.1
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 6.1e-108 394.4 235 81.3
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 7.9e-108 394.0 236 81.4
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.0e-107 393.7 236 81.4
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.4e-107 393.3 236 82.2
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.8e-107 392.9 238 81.1
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 6.7e-107 391.0 236 80.9
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 8.8e-107 390.6 235 81.7
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.1e-106 390.2 236 81.8
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 8.2e-105 384.0 236 79.2
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.1e-104 383.6 235 80.9
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.1e-104 382.1 236 80.5
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 3.1e-104 382.1 236 78.8
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 3.1e-104 382.1 236 78.8
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 4.1e-104 381.7 236 79.7
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 6.9e-104 380.9 236 78.4
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 2.6e-103 379.0 233 78.1
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 3.4e-103 378.6 233 80.3
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 7.7e-103 377.5 235 77.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 7.7e-103 377.5 238 74.8
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 1.3e-102 376.7 235 77.0
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.9e-102 375.6 236 78.4
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 6.5e-102 374.4 238 76.9
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.1e-101 373.6 234 79.1
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 1.1e-101 373.6 235 76.2
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.4e-101 373.2 236 78.0
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.5e-101 372.5 235 76.6
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.2e-101 371.7 236 78.0
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 7.9e-100 367.5 226 77.4
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.4e-99 366.7 235 74.5
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 2.3e-99 365.9 236 75.8
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.3e-99 365.9 237 74.7
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 3.0e-99 365.5 237 76.8
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 8.8e-99 364.0 236 75.4
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.1e-98 363.6 260 68.8
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.1e-98 363.6 236 76.7
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 2.6e-98 362.5 282 66.7
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 5.7e-98 361.3 235 75.3
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.7e-97 359.8 238 73.9
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.7e-97 359.8 236 75.0
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.2e-97 359.4 236 75.0
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 1.1e-96 357.1 233 72.5
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.4e-96 356.7 305 61.6
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 2.4e-96 355.9 236 74.2
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 7.0e-96 354.4 236 73.7
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 7.0e-96 354.4 238 73.1
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.5e-95 353.2 272 66.2
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 1.5e-95 353.2 236 73.3
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 3.4e-95 352.1 236 72.0
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 4.5e-95 351.7 236 72.0
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.5e-95 351.7 236 72.0
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 1.0e-94 350.5 236 72.9
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 2.2e-94 349.4 236 70.8
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.9e-94 349.0 236 71.2
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.8e-94 348.6 231 73.6
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 5.0e-94 348.2 236 71.2
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 5.0e-94 348.2 236 72.0
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 5.0e-94 348.2 236 71.6
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 6.5e-94 347.8 236 71.2
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 6.5e-94 347.8 236 71.2
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.1e-93 347.1 233 72.1
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.1e-93 347.1 233 72.1
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 4.2e-93 345.1 236 72.9
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 9.4e-93 344.0 232 72.0
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 1.6e-92 343.2 238 70.6
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.6e-92 343.2 220 78.6
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.1e-92 342.8 236 69.5
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.1e-92 342.8 208 81.7
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 3.6e-92 342.0 206 83.5
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.0e-91 340.5 202 84.2
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 3.3e-90 335.5 203 81.3
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 9.7e-90 334.0 263 67.3
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.1e-88 330.5 235 70.6
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.8e-88 329.7 210 78.1
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.4e-88 329.3 233 67.0
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 4.1e-88 328.6 236 71.2
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 9.1e-88 327.4 221 71.9
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 3.5e-87 325.5 235 67.2
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 4.5e-87 325.1 208 75.0
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 1.0e-86 323.9 239 66.5
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.3e-86 323.6 238 66.4
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 8.5e-86 320.9 240 64.6
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.5e-85 320.1 235 65.5
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.5e-85 320.1 206 76.2
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 4.2e-85 318.5 205 78.5
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.1e-84 316.2 235 67.7
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.2e-83 311.6 237 63.3
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 8.8e-83 310.8 237 68.4
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 8.8e-83 310.8 237 68.4
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 4.4e-82 308.5 196 77.0
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 5.7e-82 308.1 203 74.9
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.3e-81 307.0 227 67.4
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.8e-81 305.1 234 66.2
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 9.1e-80 300.8 188 77.1
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.7e-79 299.3 233 60.1
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.9e-79 298.1 213 70.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.3e-78 297.0 188 76.6
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.7e-78 296.6 234 61.5
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.7e-78 296.6 234 61.5
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 2.9e-78 295.8 234 62.4
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 3.8e-78 295.4 234 61.1
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 5.0e-78 295.0 239 61.1
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 6.5e-78 294.7 234 62.0
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.5e-74 283.5 185 75.7
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 3.4e-74 282.3 169 81.1
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 9.8e-74 280.8 239 58.2
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 5.4e-72 275.0 219 61.2
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.6e-71 273.5 208 68.3
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 3.5e-71 272.3 230 57.8
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 7.7e-71 271.2 166 80.1
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.6e-68 263.5 239 58.6
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 8.0e-68 261.2 219 56.6
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 2.0e-66 256.5 153 81.7
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 7.5e-66 254.6 166 75.9
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.4e-64 250.4 239 56.5
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 9.2e-64 247.7 226 55.8
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 2.7e-63 246.1 219 57.1
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 2.3e-62 243.0 149 77.2
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.0e-62 241.9 210 61.0
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 3.3e-53 212.6 173 59.5
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 9.8e-50 201.1 128 78.1
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 6.4e-49 198.4 233 48.1
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 8.3e-49 198.0 236 49.2
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 7.0e-48 194.9 135 70.4
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.3e-46 189.9 135 67.4
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 5.4e-40 168.7 106 77.4
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 7.1e-40 168.3 235 45.5
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.6e-39 167.2 102 81.4
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 2.1e-39 166.8 104 79.8
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 3.0e-38 162.9 111 72.1
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 2.5e-37 159.8 214 42.5
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 2.6e-34 149.8 112 71.4
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 4.2e-32 142.5 262 37.8
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 5.4e-32 142.1 144 49.3
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 7.1e-32 141.7 76 82.9
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 3.9e-30 136.0 215 36.7
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 2.2e-25 120.2 220 36.4
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 2.2e-25 120.2 220 36.4
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 7.8e-23 111.7 74 74.3
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 3.0e-22 109.8 101 62.4
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 9.0e-19 98.2 65 73.8
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 9.9e-18 94.7 200 31.0
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 7.9e-15 85.1 90 46.7
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 2.3e-14 83.6 51 78.4
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 3.9e-14 82.8 55 67.3
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.1e-13 81.3 49 75.5
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 1.1e-11 74.7 48 68.8
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 2.4e-11 73.6 56 66.1
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.4e-11 73.6 50 66.0
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 4.5e-10 69.3 49 63.3
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 1.4e-08 64.3 50 54.0
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 5.1e-06 55.8 71 46.5


User provided reference genes

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