Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 1.5e-74 282.7 136 100.0
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 1.5e-74 282.7 136 100.0
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 1.2e-68 263.1 136 91.2
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 2.7e-68 261.9 136 90.4
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 2.7e-68 261.9 135 91.9
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 4.6e-68 261.2 136 91.2
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 1.0e-67 260.0 136 89.7
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 1.3e-67 259.6 136 89.7
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 1.3e-67 259.6 136 89.0
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 91.9
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 90.4
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 89.7
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 90.4
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 89.7
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 3.9e-67 258.1 136 91.2
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 5.1e-67 257.7 136 89.0
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 6.6e-67 257.3 136 89.7
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 6.6e-67 257.3 136 89.0
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 6.6e-67 257.3 136 89.7
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 87.5
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 88.2
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 90.4
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 88.2
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 88.2
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 88.2
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 89.0
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 4.3e-66 254.6 136 89.0
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 4.3e-66 254.6 136 88.2
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 4.3e-66 254.6 136 87.5
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 5.6e-66 254.2 135 86.7
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 9.5e-66 253.4 135 89.6
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 9.5e-66 253.4 136 88.2
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 88.2
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 1.2e-65 253.1 135 88.1
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.8
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 89.0
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.8
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.8
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.8
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 87.5
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 86.8
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 4.7e-65 251.1 135 88.1
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 6.2e-65 250.8 136 88.2
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 6.2e-65 250.8 136 88.2
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 87.5
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 87.5
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 87.5
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 87.5
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 1.1e-64 250.0 135 87.4
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 86.8
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 86.8
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.8e-64 249.2 135 86.7
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 84.6
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 84.6
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 86.0
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 83.8
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 83.8
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 83.8
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 83.8
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 6.8e-64 247.3 132 90.9
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 8.9e-64 246.9 134 88.1
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 8.9e-64 246.9 136 85.3
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 83.1
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 1.5e-63 246.1 136 83.8
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 1.5e-63 246.1 135 86.7
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 83.1
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 86.0
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 4.4e-63 244.6 136 83.1
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 82.4
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 7.6e-63 243.8 136 84.6
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 2.9e-62 241.9 136 85.3
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 4.9e-62 241.1 135 84.4
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 6.4e-62 240.7 136 84.6
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 9.2e-61 236.9 136 83.1
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 1.6e-60 236.1 136 81.6
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 1.6e-60 236.1 136 81.6
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 2.1e-60 235.7 136 81.6
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 2.7e-60 235.3 136 83.8
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 2.7e-60 235.3 136 81.6
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 3.5e-60 235.0 131 85.5
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 4.6e-60 234.6 124 90.3
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 4.6e-60 234.6 129 86.0
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 7.8e-60 233.8 138 81.9
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 7.8e-60 233.8 136 80.1
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 1.3e-59 233.0 136 80.9
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 1.7e-59 232.6 136 80.1
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 2.3e-59 232.3 136 80.1
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 3.0e-59 231.9 132 81.8
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 3.0e-59 231.9 136 80.1
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 8.7e-59 230.3 136 80.9
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 1.1e-58 229.9 124 87.1
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.5e-58 229.6 124 87.9
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 3.3e-58 228.4 124 88.7
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 9.6e-58 226.9 124 85.5
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 2.8e-57 225.3 130 83.8
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 4.0e-56 221.5 124 88.7
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.0e-56 221.5 124 86.3
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 5.2e-56 221.1 132 75.8
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 1.2e-55 219.9 119 88.2
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 2.0e-55 219.2 133 77.4
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 2.6e-55 218.8 133 75.9
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 7.6e-55 217.2 140 74.3
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 8.4e-54 213.8 206 56.3
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 1.9e-53 212.6 135 72.6
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 2.4e-53 212.2 134 76.1
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 2.7e-52 208.8 134 74.6
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 7.3e-50 200.7 131 70.2
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 9.6e-50 200.3 120 79.2
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 9.6e-50 200.3 136 70.6
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 3.1e-48 195.3 131 69.5
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 1.2e-47 193.4 121 77.7
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 1.9e-45 186.0 153 62.1
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 7.9e-44 180.6 130 66.2
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 3.0e-43 178.7 130 64.6
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.3e-42 175.3 92 89.1
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 8.1e-41 170.6 128 61.7
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 1.1e-40 170.2 125 72.8
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 7.9e-36 154.1 76 93.4
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 3.0e-35 152.1 74 93.2
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 3.0e-35 152.1 74 93.2
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 8.7e-35 150.6 74 93.2
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 2.5e-34 149.1 75 88.0
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 1.3e-33 146.7 92 73.9
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.3e-33 146.7 75 89.3
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 1.8e-32 142.9 74 83.8
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 1.8e-32 142.9 74 83.8
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 3.1e-32 142.1 74 86.5
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 3.8e-30 135.2 73 82.2
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 3.9e-27 125.2 76 77.6
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 1.9e-26 122.9 140 52.1
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 9.0e-24 114.0 72 79.2
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 2.0e-23 112.8 136 41.2
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 3.7e-17 92.0 50 90.0
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 6.3e-17 91.3 50 82.0
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 5.3e-16 88.2 117 45.3
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 1.5e-15 86.7 163 41.7
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 3.2e-13 79.0 126 38.1
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 1.4e-11 73.6 70 60.0
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 1.4e-08 63.5 35 77.1
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 4.1e-08 62.0 67 49.3


User provided reference genes

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