Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 6.9e-69 263.8 132 100.0
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.3e-27 126.7 212 40.1
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.6e-25 119.8 211 39.8
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.1e-25 119.4 211 39.8
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 8.8e-24 114.0 175 40.6
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 3.3e-23 112.1 211 37.0
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 3.7e-22 108.6 187 37.4
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 4.8e-22 108.2 167 40.7
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.4e-21 106.7 211 35.5
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.4e-21 106.7 212 34.9
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.8e-21 106.3 212 34.4
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.4e-21 105.9 162 40.7
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.4e-21 105.9 213 35.7
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.4e-21 105.9 213 35.7
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 3.1e-21 105.5 212 36.3
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.1e-21 105.5 211 35.1
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.1e-21 105.5 212 34.9
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.1e-21 105.5 212 34.9
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 4.1e-21 105.1 212 34.4
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 4.1e-21 105.1 211 34.1
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 5.3e-21 104.8 212 34.9
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 6.9e-21 104.4 212 34.4
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 9.1e-21 104.0 212 34.4
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.2e-20 103.6 210 32.9
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.2e-20 103.6 212 34.9
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.5e-20 103.2 212 33.5
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 2.0e-20 102.8 226 33.2
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.0e-20 102.8 212 34.4
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 2.0e-20 102.8 212 33.0
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 2.6e-20 102.4 212 34.4
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 3.4e-20 102.1 212 34.4
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.4e-20 102.1 211 34.1
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 5.9e-20 101.3 212 33.5
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 5.9e-20 101.3 211 32.7
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 5.9e-20 101.3 211 31.8
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 5.9e-20 101.3 212 34.0
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 7.7e-20 100.9 212 33.5
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 7.7e-20 100.9 226 32.3
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.0e-19 100.5 213 33.8
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.0e-19 100.5 210 34.8
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.3e-19 100.1 211 31.3
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.3e-19 100.1 212 32.1
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.3e-19 100.1 211 34.6
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 1.7e-19 99.8 212 33.5
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.7e-19 99.8 219 33.3
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.7e-19 99.8 228 32.0
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 2.2e-19 99.4 211 33.2
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 2.2e-19 99.4 211 33.2
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 2.9e-19 99.0 220 33.6
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.9e-19 99.0 211 31.3
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 2.9e-19 99.0 211 31.3
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 3.8e-19 98.6 211 32.2
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 5.0e-19 98.2 211 35.5
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 6.5e-19 97.8 212 34.0
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 6.5e-19 97.8 220 31.8
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 6.5e-19 97.8 211 33.2
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 8.5e-19 97.4 215 33.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 8.5e-19 97.4 215 33.0
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 8.5e-19 97.4 213 33.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 8.5e-19 97.4 211 33.2
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 8.5e-19 97.4 211 33.2
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.5e-19 97.4 219 32.0
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.5e-19 97.4 219 32.0
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.1e-18 97.1 212 34.0
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.4e-18 96.7 215 33.0
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.9e-18 96.3 216 32.4
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.9e-18 96.3 212 34.4
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.9e-18 96.3 212 33.5
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.5e-18 95.9 213 34.3
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 4.2e-18 95.1 212 32.5
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 5.5e-18 94.7 216 32.4
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 5.5e-18 94.7 212 32.1
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 5.5e-18 94.7 212 32.5
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 7.2e-18 94.4 216 31.9
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 7.2e-18 94.4 212 33.5
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 7.2e-18 94.4 212 33.0
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 7.2e-18 94.4 212 31.6
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 9.4e-18 94.0 212 31.1
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.4e-18 94.0 212 31.1
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.4e-18 94.0 212 31.1
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 9.4e-18 94.0 212 33.0
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.2e-17 93.6 212 31.6
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-17 93.6 212 31.1
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.6e-17 93.2 212 31.6
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.6e-17 93.2 201 33.8
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.1e-17 92.8 218 33.0
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.6e-17 92.0 212 31.6
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.6e-17 92.0 212 31.6
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.6e-17 92.0 66 68.2
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 6.1e-17 91.3 212 32.1
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 6.1e-17 91.3 211 32.2
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 8.0e-17 90.9 214 33.6
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.3e-16 89.4 208 33.7
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.3e-16 89.4 208 33.7
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 2.3e-16 89.4 214 31.8
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 2.3e-16 89.4 188 34.0
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.3e-16 89.4 209 33.0
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.0e-16 89.0 214 32.2
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 3.9e-16 88.6 205 33.2
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 5.2e-16 88.2 209 33.0
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 6.7e-16 87.8 212 31.6
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 6.7e-16 87.8 215 33.5
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.7e-16 87.8 215 33.5
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 8.8e-16 87.4 259 29.0
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-15 87.0 215 33.0
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.0e-15 86.3 217 32.7
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 4.4e-15 85.1 202 31.2
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.3e-14 83.6 208 30.3
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 2.2e-14 82.8 191 31.9
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 2.2e-14 82.8 211 31.3
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.8e-14 82.4 255 27.8
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.7e-14 82.0 256 27.7
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.2e-14 80.9 54 64.8
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.1e-13 79.0 66 59.1
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 3.1e-13 79.0 174 33.3
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 5.3e-13 78.2 205 28.8
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 5.3e-13 78.2 198 30.8
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 7.0e-13 77.8 200 31.0
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.2e-12 77.0 66 57.6
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.6e-12 76.6 210 31.0
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 2.0e-12 76.3 66 57.6
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.6e-12 75.9 216 29.6
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.5e-12 75.5 66 56.1
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 5.9e-12 74.7 231 28.1
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.3e-11 73.6 54 63.0
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.3e-11 73.6 54 63.0
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 2.9e-11 72.4 206 29.1
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.1e-10 70.5 185 30.3
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.5e-10 70.1 68 52.9
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 9.4e-10 67.4 232 28.4
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.2e-09 67.0 206 28.2
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.6e-09 66.6 48 64.6
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 1.6e-09 66.6 48 64.6
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.1e-09 64.7 212 29.7
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.8e-08 63.2 48 60.4
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.8e-08 63.2 48 60.4
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.8e-08 63.2 63 50.8
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.3e-08 62.8 42 66.7
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 3.0e-08 62.4 48 60.4
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 4.0e-08 62.0 48 58.3
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.2e-07 60.5 47 59.6
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 2.0e-07 59.7 51 54.9
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 3.3e-07 58.9 40 67.5
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 4.8e-06 55.1 51 56.9
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 4.8e-06 55.1 58 46.6
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 6.3e-06 54.7 59 47.5


User provided reference genes

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