Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 2.8e-44 181.8 109 100.0
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 4.1e-43 177.9 109 85.3
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 2.0e-37 159.1 109 78.0
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 2.2e-36 155.6 109 75.2
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 3.6e-31 138.3 84 78.6
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 6.1e-31 137.5 84 77.4
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.1e-31 137.5 84 77.4
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.8e-30 136.0 84 77.4
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.8e-30 136.0 84 76.2
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.8e-30 136.0 84 76.2
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.8e-30 136.0 84 76.2
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.8e-30 136.0 84 76.2
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.0e-30 135.2 84 76.2
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 5.2e-30 134.4 84 76.2
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 6.8e-30 134.0 84 75.0
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 6.8e-30 134.0 84 77.4
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 2.6e-29 132.1 84 76.2
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 3.4e-29 131.7 84 75.0
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 4.4e-29 131.3 84 73.8
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 4.4e-29 131.3 84 73.8
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 1.7e-28 129.4 84 72.6
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 2.2e-28 129.0 84 72.6
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 2.8e-28 128.6 84 73.8
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 3.7e-28 128.3 106 60.4
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 3.7e-28 128.3 84 72.6
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 4.8e-28 127.9 81 71.6
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 4.8e-28 127.9 81 71.6
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 4.8e-28 127.9 84 73.8
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 4.8e-28 127.9 84 72.6
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 6.3e-28 127.5 106 61.3
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 8.3e-28 127.1 81 74.1
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 8.3e-28 127.1 81 74.1
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 8.3e-28 127.1 109 62.4
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 8.3e-28 127.1 84 73.8
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 1.1e-27 126.7 109 62.4
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.4e-27 126.3 81 72.8
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 1.4e-27 126.3 84 70.2
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 1.8e-27 125.9 84 71.4
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 2.4e-27 125.6 84 72.6
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 2.4e-27 125.6 84 72.6
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 3.1e-27 125.2 81 70.4
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 3.1e-27 125.2 84 72.6
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 4.1e-27 124.8 97 67.0
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 7.0e-27 124.0 81 72.8
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 7.0e-27 124.0 84 73.8
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 7.0e-27 124.0 92 68.5
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 9.1e-27 123.6 81 69.1
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 9.1e-27 123.6 84 70.2
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.2e-26 123.2 81 69.1
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.6e-26 122.9 84 69.0
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.6e-26 122.9 109 59.6
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.0e-26 122.5 82 74.4
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 2.0e-26 122.5 84 71.4
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 2.0e-26 122.5 81 72.8
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 2.7e-26 122.1 84 69.0
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 2.7e-26 122.1 84 67.9
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.7e-26 122.1 84 70.2
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 3.5e-26 121.7 84 69.0
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 4.5e-26 121.3 81 74.1
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.5e-26 121.3 81 69.1
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 5.9e-26 120.9 84 70.2
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 5.9e-26 120.9 81 70.4
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 5.9e-26 120.9 84 67.9
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.0e-25 120.2 84 70.2
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.3e-25 119.8 84 66.7
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.3e-25 119.8 84 69.0
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 1.7e-25 119.4 84 66.7
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.7e-25 119.4 81 69.1
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 2.9e-25 118.6 82 64.6
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 2.9e-25 118.6 81 67.9
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 2.9e-25 118.6 83 68.7
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 2.9e-25 118.6 83 68.7
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 2.9e-25 118.6 84 67.9
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.9e-25 118.6 84 65.5
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.8e-25 118.2 84 69.0
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 3.8e-25 118.2 84 67.9
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 6.5e-25 117.5 81 66.7
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 8.6e-25 117.1 84 65.5
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 8.6e-25 117.1 85 69.4
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 1.1e-24 116.7 84 64.3
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.1e-24 116.7 84 67.9
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 1.1e-24 116.7 81 65.4
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.5e-24 116.3 84 67.9
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.5e-24 116.3 84 65.5
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.5e-24 116.3 81 64.2
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.9e-24 115.9 84 69.0
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 1.9e-24 115.9 84 65.5
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.9e-24 115.9 81 66.7
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 2.5e-24 115.5 70 78.6
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 2.5e-24 115.5 81 67.9
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 2.5e-24 115.5 81 67.9
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.3e-24 115.2 84 65.5
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 3.3e-24 115.2 84 65.5
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 4.2e-24 114.8 84 63.1
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 4.2e-24 114.8 84 63.1
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 4.2e-24 114.8 84 63.1
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 5.5e-24 114.4 84 64.3
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 5.5e-24 114.4 84 63.1
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 5.5e-24 114.4 84 64.3
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 5.5e-24 114.4 72 75.0
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 7.2e-24 114.0 130 51.5
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 9.5e-24 113.6 84 67.9
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 1.2e-23 113.2 82 64.6
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.6e-23 112.8 72 73.6
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 3.6e-23 111.7 82 63.4
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 4.7e-23 111.3 84 61.9
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 6.1e-23 110.9 85 62.4
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 6.1e-23 110.9 84 67.9
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 8.0e-23 110.5 108 56.5
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.0e-22 110.2 102 55.9
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.4e-22 109.8 84 60.7
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.8e-22 109.4 108 55.6
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 2.3e-22 109.0 78 65.4
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 2.3e-22 109.0 85 62.4
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 4.0e-22 108.2 82 62.2
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 5.2e-22 107.8 82 62.2
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.2e-21 106.7 84 60.7
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 2.0e-21 105.9 84 63.1
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 2.0e-21 105.9 84 63.1
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.6e-21 105.5 84 64.3
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 3.4e-21 105.1 70 68.6
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 9.8e-21 103.6 84 61.9
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 9.8e-21 103.6 81 61.7
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 2.2e-20 102.4 84 60.7
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 2.2e-20 102.4 106 50.9
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 2.8e-20 102.1 81 61.7
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.1e-19 100.1 80 58.8
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.8e-19 99.4 85 57.6
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 6.6e-17 90.9 85 55.3
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.5e-16 89.0 52 84.6
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 2.1e-15 85.9 52 78.8
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 2.8e-15 85.5 52 80.8
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 8.0e-15 84.0 79 54.4
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 6.8e-14 80.9 52 73.1
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.5e-13 79.7 53 75.5
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.0e-13 79.3 53 77.4
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 4.4e-13 78.2 80 50.0
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 2.9e-12 75.5 55 65.5
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 3.7e-12 75.1 79 49.4
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.1e-11 73.6 52 65.4
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 4.1e-11 71.6 51 74.5
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 7.0e-11 70.9 48 66.7
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 9.2e-11 70.5 42 78.6
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.8e-07 58.9 68 55.9
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 4.7e-07 58.2 57 54.4
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 1.4e-06 56.6 68 45.6


User provided reference genes

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