Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 7.7e-38 159.8 73 100.0
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 1.7e-37 158.7 73 97.3
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 3.2e-28 127.9 70 77.1
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 7.2e-28 126.7 70 78.6
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.6e-27 125.6 70 77.1
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 1.6e-27 125.6 70 77.1
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 1.6e-27 125.6 70 75.7
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 2.1e-27 125.2 70 75.7
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.1e-27 125.2 70 75.7
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 2.1e-27 125.2 70 75.7
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 2.1e-27 125.2 70 75.7
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 2.7e-27 124.8 70 74.3
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 2.7e-27 124.8 70 74.3
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 3.6e-27 124.4 70 72.9
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 74.3
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 4.7e-27 124.0 70 72.9
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 6.1e-27 123.6 70 75.7
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 8.0e-27 123.2 70 75.7
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 1.0e-26 122.9 70 72.9
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 1.0e-26 122.9 70 72.9
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 1.0e-26 122.9 69 78.3
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.0e-26 122.9 70 75.7
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 1.0e-26 122.9 70 72.9
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 1.4e-26 122.5 70 71.4
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 1.4e-26 122.5 70 74.3
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 1.4e-26 122.5 70 72.9
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 1.4e-26 122.5 70 72.9
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.4e-26 122.5 70 72.9
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.4e-26 122.5 70 72.9
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.4e-26 122.5 70 72.9
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 1.8e-26 122.1 70 74.3
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 1.8e-26 122.1 70 72.9
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 1.8e-26 122.1 70 72.9
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 1.8e-26 122.1 70 74.3
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 2.3e-26 121.7 70 71.4
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 2.3e-26 121.7 70 72.9
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 3.0e-26 121.3 70 74.3
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 3.0e-26 121.3 70 74.3
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 3.0e-26 121.3 70 74.3
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 3.0e-26 121.3 70 74.3
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 8.8e-26 119.8 70 74.3
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 8.8e-26 119.8 70 71.4
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 1.2e-25 119.4 70 74.3
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 1.2e-25 119.4 70 74.3
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 1.5e-25 119.0 70 75.7
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 1.5e-25 119.0 72 70.8
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 2.0e-25 118.6 70 70.0
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 2.6e-25 118.2 70 71.4
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 2.6e-25 118.2 69 72.5
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 2.6e-25 118.2 70 71.4
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 4.4e-25 117.5 70 70.0
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 4.4e-25 117.5 70 71.4
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 4.4e-25 117.5 70 71.4
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 4.4e-25 117.5 70 72.9
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 5.7e-25 117.1 70 71.4
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 5.7e-25 117.1 70 72.9
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 5.7e-25 117.1 70 70.0
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 7.5e-25 116.7 70 70.0
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 9.8e-25 116.3 66 72.7
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 9.8e-25 116.3 66 72.7
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 9.8e-25 116.3 70 70.0
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 9.8e-25 116.3 70 71.4
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 9.8e-25 116.3 70 70.0
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 1.3e-24 115.9 70 68.6
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.3e-24 115.9 70 71.4
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 1.3e-24 115.9 70 71.4
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 1.7e-24 115.5 66 71.2
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 1.7e-24 115.5 70 71.4
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 2.8e-24 114.8 70 70.0
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 2.8e-24 114.8 70 68.6
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 3.7e-24 114.4 70 67.1
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 1.1e-23 112.8 70 67.1
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 1.4e-23 112.5 70 64.3
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 3.1e-23 111.3 71 63.4
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 4.1e-23 110.9 70 70.0
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 1.2e-22 109.4 70 65.7
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 2.0e-22 108.6 70 70.0
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.5e-22 107.5 105 50.5
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 5.9e-22 107.1 105 49.5
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 1.7e-21 105.5 66 68.2
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 8.6e-21 103.2 61 73.8
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 1.1e-20 102.8 67 65.7
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 1.1e-20 102.8 70 62.9
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.5e-20 102.4 56 80.4
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 1.9e-20 102.1 59 76.3
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 1.2e-19 99.4 56 73.2
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 1.6e-19 99.0 56 73.2
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 1.6e-19 99.0 56 73.2
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 1.6e-19 99.0 56 73.2
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.1e-19 98.6 57 73.7
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 2.8e-19 98.2 56 78.6
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 2.8e-19 98.2 56 73.2
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.8e-19 98.2 56 75.0
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 3.6e-19 97.8 56 76.8
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 8.0e-19 96.7 56 75.0
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.0e-18 96.3 56 75.0
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 1.0e-18 96.3 56 75.0
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 2.3e-18 95.1 113 44.2
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.0e-18 94.7 56 73.2
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 4.0e-18 94.4 56 73.2
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 5.2e-18 94.0 56 69.6
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 5.2e-18 94.0 56 69.6
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 5.2e-18 94.0 56 69.6
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 6.8e-18 93.6 56 71.4
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 6.8e-18 93.6 68 55.9
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 8.9e-18 93.2 66 59.1
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 1.2e-17 92.8 57 68.4
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 1.2e-17 92.8 56 76.8
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 1.5e-17 92.4 56 75.0
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 2.8e-16 88.2 56 67.9
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 6.3e-16 87.0 52 69.2
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.4e-15 85.9 70 52.9
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.4e-15 85.1 63 58.7
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 2.4e-15 85.1 49 75.5
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 2.4e-15 85.1 56 67.9
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 2.4e-15 85.1 52 69.2
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 5.9e-14 80.5 68 48.5
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 7.8e-14 80.1 56 58.9
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.0e-13 79.7 70 51.4
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 8.6e-13 76.6 44 75.0
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 1.5e-12 75.9 70 47.1
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 4.3e-12 74.3 52 63.5
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 1.2e-11 72.8 66 50.0
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 2.1e-11 72.0 48 66.7
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 4.7e-11 70.9 50 62.0
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 8.9e-10 66.6 70 40.0
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 1.5e-09 65.9 67 41.8
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 7.5e-09 63.5 56 48.2
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 4.6e-06 54.3 50 52.0
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 7.8e-06 53.5 45 53.3


User provided reference genes

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