Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3521 Papaver somniferum HOM05D005813 ORTHO05D007310 1.2e-208 729.6 353 100.0
PSO782G1692 Papaver somniferum HOM05D005813 ORTHO05D007310 1.1e-118 430.6 328 64.6
PSO478G4467 Papaver somniferum HOM05D005813 ORTHO05D007310 1.9e-118 429.9 328 64.9
CiPaw.01G262200 Carya illinoinensis HOM05D005813 ORTHO05D007310 1.9e-113 413.3 347 59.9
CiPaw.02G167800 Carya illinoinensis HOM05D005813 ORTHO05D007310 3.5e-112 409.1 348 60.3
Haze_16813 Corylus avellana HOM05D005813 ORTHO05D007310 8.7e-111 404.4 314 63.7
Nn1g01240 Nelumbo nucifera HOM05D005813 ORTHO05D007310 8.7e-111 404.4 349 59.3
Cpa.g.sc18.111 Carica papaya HOM05D005813 ORTHO05D007310 1.1e-110 404.1 313 63.3
TAR374G0529 Trochodendron aralioides HOM05D005813 ORTHO05D007310 1.1e-110 404.1 348 60.6
Lj7A528T62 Lonicera japonica HOM05D005813 ORTHO05D007310 1.9e-110 403.3 337 60.2
Nn4g26391 Nelumbo nucifera HOM05D005813 ORTHO05D007310 1.9e-110 403.3 329 61.1
Duzib138G0196 Durio zibethinus HOM05D005813 ORTHO05D007310 4.3e-110 402.1 348 57.8
QL08p052527 Quercus lobata HOM05D005813 ORTHO05D007310 4.3e-110 402.1 349 58.7
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 7.4e-110 401.4 335 59.1
MBI04_g35272_MAGBIO Magnolia biondii HOM05D005813 ORTHO05D007310 7.4e-110 401.4 351 57.8
Manes.05G045300 Manihot esculenta HOM05D005813 ORTHO05D007310 7.4e-110 401.4 349 57.0
CSS0030666 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 9.6e-110 401.0 346 59.2
CSS0042195 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 9.6e-110 401.0 346 59.2
CsaV3_3G009700 Cucumis sativus L. HOM05D005813 ORTHO05D007310 9.6e-110 401.0 354 56.2
Glyma.09G269300 Glycine max HOM05D005813 ORTHO05D007310 1.3e-109 400.6 341 57.5
Medtr7g074890 Medicago truncatula HOM05D005813 ORTHO05D007310 1.3e-109 400.6 332 59.9
Phvul.008G076400 Phaseolus vulgaris HOM05D005813 ORTHO05D007310 1.3e-109 400.6 313 61.7
Ca_11657_v3 Cicer arietinum L. HOM05D005813 ORTHO05D007310 1.6e-109 400.2 332 59.9
Duzib133G0639 Durio zibethinus HOM05D005813 ORTHO05D007310 2.1e-109 399.8 349 58.2
Cfa001724 Carpinus fangiana HOM05D005813 ORTHO05D007310 2.8e-109 399.4 349 59.3
Eucgr.D02453 Eucalyptus grandis HOM05D005813 ORTHO05D007310 2.8e-109 399.4 325 60.9
MELO3C006191.2 Cucumis melo HOM05D005813 ORTHO05D007310 3.6e-109 399.1 353 55.8
Glyma.18G220700 Glycine max HOM05D005813 ORTHO05D007310 3.6e-109 399.1 345 57.4
PGR031G3848 Punica granatum HOM05D005813 ORTHO05D007310 6.2e-109 398.3 314 61.8
GSVIVG01027606001 Vitis vinifera HOM05D005813 ORTHO05D007310 1.4e-108 397.1 349 57.9
Dinv43710 Davidia involucrata HOM05D005813 ORTHO05D007310 4.0e-108 395.6 350 58.6
Gohir.D08G155500 Gossypium hirsutum HOM05D005813 ORTHO05D007310 4.0e-108 395.6 315 61.6
Gorai.004G161700 Gossypium raimondii HOM05D005813 ORTHO05D007310 4.0e-108 395.6 315 61.6
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 4.0e-108 395.6 336 58.9
Migut.B01633 Erythranthe guttata HOM05D005813 ORTHO05D007310 6.9e-108 394.8 356 57.3
TPR.G29407 Trifolium pratense HOM05D005813 ORTHO05D007310 6.9e-108 394.8 338 58.9
Lalb_Chr03g0039571 Lupinus albus HOM05D005813 ORTHO05D007310 9.0e-108 394.4 347 57.1
Gohir.A08G134600 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.2e-107 394.0 315 61.3
arahy.Tifrunner.gnm1.ann1.DKE7V3 Arachis hypogaea HOM05D005813 ORTHO05D007310 1.5e-107 393.7 354 55.4
AL6G53420 Arabidopsis lyrata HOM05D005813 ORTHO05D007310 2.6e-107 392.9 335 57.9
arahy.Tifrunner.gnm1.ann1.4B5N4V Arachis hypogaea HOM05D005813 ORTHO05D007310 2.6e-107 392.9 360 56.1
CANSAT56G4177 Cannabis sativa HOM05D005813 ORTHO05D007310 2.6e-107 392.9 314 60.5
Aqoxy7G00631 Aquilegia oxysepala HOM05D005813 ORTHO05D007310 5.8e-107 391.7 356 55.9
AT4G00090 Arabidopsis thaliana HOM05D005813 ORTHO05D007310 9.9e-107 391.0 335 57.6
ClCG05G002290 Citrullus lanatus HOM05D005813 ORTHO05D007310 9.9e-107 391.0 353 55.0
Potri.002G148100 Populus trichocarpa HOM05D005813 ORTHO05D007310 9.9e-107 391.0 316 60.4
Sabra02G0117100 Salix brachista HOM05D005813 ORTHO05D007310 9.9e-107 391.0 349 56.2
THA.LOC104817009 Tarenaya hassleriana HOM05D005813 ORTHO05D007310 9.9e-107 391.0 332 58.4
CARHR248130 Cardamine hirsuta HOM05D005813 ORTHO05D007310 1.7e-106 390.2 335 58.8
Sabra02G0115400 Salix brachista HOM05D005813 ORTHO05D007310 2.2e-106 389.8 351 55.8
MSTRG.17192 Avicennia marina HOM05D005813 ORTHO05D007310 3.8e-106 389.0 345 56.8
Thhalv10028676m.g Eutrema salsugineum HOM05D005813 ORTHO05D007310 3.8e-106 389.0 313 60.1
Sed0000354 Sechium edule HOM05D005813 ORTHO05D007310 4.9e-106 388.7 353 53.8
Sc02g0002610 Simmondsia chinensis HOM05D005813 ORTHO05D007310 1.1e-105 387.5 329 57.4
SalBow5G4545 Salvia bowleyana HOM05D005813 ORTHO05D007310 1.4e-105 387.1 310 61.9
SGA_v2.0_scaffold153G37009 Striga asiatica HOM05D005813 ORTHO05D007310 1.9e-105 386.7 353 56.1
PSO782G5041 Papaver somniferum HOM05D005813 ORTHO05D007310 2.4e-105 386.3 284 67.3
Sp6g00150 Schrenkiella parvula HOM05D005813 ORTHO05D007310 2.4e-105 386.3 347 55.9
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 5.5e-105 385.2 334 56.6
Cc02_g23900 Coffea canephora HOM05D005813 ORTHO05D007310 9.3e-105 384.4 346 55.8
Solyc01g091310.3 Solanum lycopersicum HOM05D005813 ORTHO05D007310 1.2e-104 384.0 360 54.2
TWI59G1428 Tripterygium wilfordii HOM05D005813 ORTHO05D007310 1.2e-104 384.0 350 56.0
C09p00110 Brassica napus HOM05D005813 ORTHO05D007310 2.1e-104 383.3 340 55.9
BraA09t35685Z Brassica rapa HOM05D005813 ORTHO05D007310 2.1e-104 383.3 340 55.9
Hund27345 Selenicereus undatus HOM05D005813 ORTHO05D007310 2.1e-104 383.3 315 59.7
Prupe.2G145000 Prunus persica HOM05D005813 ORTHO05D007310 2.7e-104 382.9 350 56.9
Sopen01g037050 Solanum pennellii HOM05D005813 ORTHO05D007310 2.7e-104 382.9 313 59.4
Carub.0006s3714 Capsella rubella HOM05D005813 ORTHO05D007310 3.5e-104 382.5 335 57.0
Ciclev10020183m.g Citrus clementina HOM05D005813 ORTHO05D007310 4.6e-104 382.1 349 55.9
FAN03G1318 Fragaria x ananassa HOM05D005813 ORTHO05D007310 4.6e-104 382.1 329 59.0
Potri.014G069400 Populus trichocarpa HOM05D005813 ORTHO05D007310 4.6e-104 382.1 350 56.3
BcaC04g24202 Brassica carinata HOM05D005813 ORTHO05D007310 6.0e-104 381.7 340 55.9
BolC9t52946H Brassica oleracea HOM05D005813 ORTHO05D007310 6.0e-104 381.7 340 55.9
FAN01G0479 Fragaria x ananassa HOM05D005813 ORTHO05D007310 6.0e-104 381.7 329 59.0
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 6.0e-104 381.7 348 55.5
CDE09G1050 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 1.3e-103 380.6 342 54.7
FvH4_7g11840 Fragaria vesca HOM05D005813 ORTHO05D007310 1.3e-103 380.6 329 58.7
FAN06G0614 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.3e-103 380.6 329 58.7
FAN10G1195 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.3e-103 380.6 329 58.4
ATR0810G089 Amborella trichopoda HOM05D005813 ORTHO05D007310 1.8e-103 380.2 348 56.0
EL10Ac1g00888 Beta vulgaris HOM05D005813 ORTHO05D007310 5.1e-103 378.6 355 52.1
BcaB01g02210 Brassica carinata HOM05D005813 ORTHO05D007310 5.1e-103 378.6 340 54.7
FAN10G2798 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.1e-102 377.5 336 57.7
MD02G1204700 Malus domestica HOM05D005813 ORTHO05D007310 1.5e-102 377.1 349 56.4
RcHm_v2.0_Chr1g0350521 Rosa chinensis HOM05D005813 ORTHO05D007310 1.5e-102 377.1 316 59.8
Sed0028100 Sechium edule HOM05D005813 ORTHO05D007310 1.5e-102 377.1 348 54.6
CDE11G1084 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 2.5e-102 376.3 352 52.3
Aa31LG5G9310 Aethionema arabicum HOM05D005813 ORTHO05D007310 3.3e-102 375.9 314 59.2
Nitab4.5_0004917g0040 Nicotiana tabacum HOM05D005813 ORTHO05D007310 3.3e-102 375.9 348 55.5
Oeu055488.1 Olea europaea HOM05D005813 ORTHO05D007310 3.3e-102 375.9 342 57.0
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 7.4e-102 374.8 334 55.4
HanXRQChr04g0122421 Helianthus annuus HOM05D005813 ORTHO05D007310 1.6e-101 373.6 345 55.9
MD07G1121300 Malus domestica HOM05D005813 ORTHO05D007310 1.6e-101 373.6 317 59.3
AUR62004213 Chenopodium quinoa HOM05D005813 ORTHO05D007310 2.8e-101 372.9 349 51.9
Ah.05g174210 Amaranthus hybridus HOM05D005813 ORTHO05D007310 8.2e-101 371.3 330 55.8
FAN06G1564 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.4e-100 370.5 341 56.3
Lsat_1_v5_gn_7_7160 Lactuca sativa HOM05D005813 ORTHO05D007310 5.8e-99 365.2 345 55.4
unitig_749.g14372 Utricularia gibba HOM05D005813 ORTHO05D007310 2.9e-98 362.8 328 56.1
unitig_76.g29089 Utricularia gibba HOM05D005813 ORTHO05D007310 2.9e-98 362.8 328 56.1
Rhsim01G0147300 Rhododendron simsii HOM05D005813 ORTHO05D007310 1.4e-97 360.5 341 54.5
vmacro21010 Vaccinium macrocarpon HOM05D005813 ORTHO05D007310 1.6e-96 357.1 305 60.0
Gorai.004G040800 Gossypium raimondii HOM05D005813 ORTHO05D007310 3.5e-96 355.9 380 48.9
Nitab4.5_0000457g0240 Nicotiana tabacum HOM05D005813 ORTHO05D007310 6.0e-96 355.1 329 55.3
Atru.chr5.306 Acer truncatum HOM05D005813 ORTHO05D007310 1.9e-94 350.1 353 51.3
HPP92_003519 Vanilla planifolia HOM05D005813 ORTHO05D007310 1.9e-94 350.1 313 56.5
Peaxi162Scf00013g03441 Petunia axillaris HOM05D005813 ORTHO05D007310 5.7e-94 348.6 358 50.8
SEGI_07293 Sequoiadendron giganteum HOM05D005813 ORTHO05D007310 2.8e-93 346.3 352 50.6
Actinidia12685 Actinidia chinensis HOM05D005813 ORTHO05D007310 1.8e-92 343.6 351 53.0
Zm00001eb065090 Zea mays HOM05D005813 ORTHO05D007310 1.1e-89 334.3 314 53.8
Psat3g115920 Pisum sativum HOM05D005813 ORTHO05D007310 9.3e-89 331.3 332 53.3
Mapoly0037s0016 Marchantia polymorpha HOM05D005813 ORTHO05D007310 2.5e-86 323.2 324 48.5
SHI01708 Sapria himalayana HOM05D005813 ORTHO05D007310 7.4e-86 321.6 309 50.2
AUR62013635 Chenopodium quinoa HOM05D005813 ORTHO05D007310 1.9e-81 307.0 354 46.9
Pp3c19_7620 Physcomitrium patens HOM05D005813 ORTHO05D007310 3.6e-80 302.8 322 48.4
DCAR_015903 Daucus carota HOM05D005813 ORTHO05D007310 4.6e-80 302.4 311 51.4
AagrBONN_evm.TU.Sc2ySwM_117.33 Anthoceros agrestis HOM05D005813 ORTHO05D007310 1.8e-79 300.4 336 47.9
PSO675G1684 Papaver somniferum HOM05D005813 ORTHO05D007310 1.8e-79 300.4 197 72.1
PGSC0003DMG400012776 Solanum tuberosum HOM05D005813 ORTHO05D007310 8.8e-79 298.1 228 61.4
A09p00750 Brassica napus HOM05D005813 ORTHO05D007310 3.7e-77 292.7 233 59.7
Psat3g202640 Pisum sativum HOM05D005813 ORTHO05D007310 5.3e-76 288.9 310 50.6
SMO367G0685 Selaginella moellendorffii HOM05D005813 ORTHO05D007310 4.7e-72 275.8 318 46.5
CBR_g23070 Chara braunii HOM05D005813 ORTHO05D007310 8.2e-69 265.0 361 40.2
CBR_g21297 Chara braunii HOM05D005813 ORTHO05D007310 7.0e-68 261.9 328 41.5
COL.COLO4_12543 Corchorus olitorius HOM05D005813 ORTHO05D007310 2.1e-64 250.4 349 41.8
Actinidia33466 Actinidia chinensis HOM05D005813 ORTHO05D007310 1.1e-52 211.5 141 73.0
PSO478G0826 Papaver somniferum HOM05D005813 ORTHO05D007310 4.5e-43 179.5 131 67.9
Cre02.g102450 Chlamydomonas reinhardtii HOM05D005813 ORTHO05D007310 3.3e-41 173.3 339 34.5
MCO05G082 Micromonas commoda HOM05D005813 ORTHO05D007310 9.8e-30 135.2 296 32.1
PSO478G4170 Papaver somniferum HOM05D005813 ORTHO05D007310 1.1e-28 131.7 131 55.0
Zm00001eb386980 Zea mays HOM05D000002 ORTHO05D006339 3.6e-08 63.5 154 27.3
Cfa003323 Carpinus fangiana HOM05D003006 ORTHO05D003438 1.1e-07 62.0 277 26.0
MD15G1178400 Malus domestica HOM05D003006 ORTHO05D003438 1.1e-07 62.0 278 25.5
Prupe.7G237000 Prunus persica HOM05D003006 ORTHO05D003438 1.4e-07 61.6 278 25.5
Gohir.A06G058700 Gossypium hirsutum HOM05D003006 ORTHO05D003438 1.8e-07 61.2 278 24.5
Mapoly0068s0040 Marchantia polymorpha HOM05D000992 ORTHO05D001928 3.1e-07 60.5 241 25.3
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 5.2e-07 59.7 161 26.7
FAN28G0168 Fragaria x ananassa HOM05D003006 ORTHO05D003438 6.9e-07 59.3 278 25.2
FvH4_1g03990 Fragaria vesca HOM05D003006 ORTHO05D003438 9.0e-07 58.9 278 25.2
FAN26G2460 Fragaria x ananassa HOM05D003006 ORTHO05D003438 9.0e-07 58.9 278 25.2
RcHm_v2.0_Chr2g0089471 Rosa chinensis HOM05D003006 ORTHO05D003438 9.0e-07 58.9 278 25.2
FAN23G1452 Fragaria x ananassa HOM05D003006 ORTHO05D003438 2.0e-06 57.8 278 25.2
PSO242G0005 Papaver somniferum HOM05D003006 ORTHO05D003438 2.6e-06 57.4 289 24.2
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 4.4e-06 56.6 164 25.0
Ciclev10025975m.g Citrus clementina HOM05D003006 ORTHO05D003438 4.4e-06 56.6 282 23.4
Hma1.2p1_0317F.1_g123420 Hydrangea macrophylla HOM05D003006 ORTHO05D003438 4.4e-06 56.6 278 24.5
MCO03G151 Micromonas commoda HOM05D002332 ORTHO05D002509 7.6e-06 55.8 255 24.7


User provided reference genes

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