Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 7.7e-175 617.1 318 100.0
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.5e-165 586.3 318 94.3
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 7.4e-93 344.7 315 58.7
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 2.2e-89 333.2 317 60.9
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.4e-88 330.5 316 54.1
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 3.0e-86 322.8 314 54.5
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.3e-85 319.3 315 52.7
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 4.3e-85 318.9 266 56.8
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 9.6e-85 317.8 303 52.8
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.3e-84 317.4 309 53.4
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.8e-84 316.2 310 53.5
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 3.7e-84 315.8 283 54.4
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 3.7e-84 315.8 283 54.8
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.4e-83 313.9 321 52.3
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 3.1e-83 312.8 308 50.6
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 4.0e-83 312.4 265 58.9
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.0e-83 312.4 310 53.9
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 5.3e-83 312.0 320 51.2
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 6.9e-83 311.6 315 51.1
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 9.0e-83 311.2 315 50.8
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.6e-82 309.7 265 58.5
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.4e-82 309.3 306 51.3
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 3.4e-82 309.3 304 52.0
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 4.5e-82 308.9 282 56.0
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 4.5e-82 308.9 282 56.4
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.8e-82 308.5 313 55.6
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.8e-82 308.5 313 55.6
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 7.6e-82 308.1 301 53.2
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.3e-81 307.4 280 54.6
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 3.8e-81 305.8 305 52.1
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 6.5e-81 305.1 297 53.5
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 4.2e-80 302.4 309 50.8
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.2e-80 302.4 308 51.3
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 4.2e-80 302.4 314 50.6
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 4.2e-80 302.4 314 50.6
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 5.5e-80 302.0 303 50.5
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 9.3e-80 301.2 270 54.1
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 9.3e-80 301.2 274 54.0
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 9.3e-80 301.2 269 56.5
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.2e-79 300.8 310 50.3
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.2e-79 300.8 282 52.5
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 2.1e-79 300.1 266 55.3
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 3.5e-79 299.3 265 55.1
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 7.9e-79 298.1 285 53.7
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.9e-79 298.1 324 48.1
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.1e-77 294.3 297 49.5
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.1e-77 294.3 325 49.8
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.1e-77 294.3 267 54.3
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.5e-77 293.1 281 49.8
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 2.5e-77 293.1 336 48.5
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.5e-77 293.1 315 48.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.6e-76 290.4 265 55.1
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 2.2e-76 290.0 315 50.2
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 2.2e-76 290.0 282 53.2
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.7e-76 289.3 267 52.8
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 8.2e-76 288.1 302 48.0
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 2.4e-75 286.6 266 54.1
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 4.1e-75 285.8 318 49.7
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 4.1e-75 285.8 314 44.9
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 5.3e-75 285.4 319 48.6
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 6.9e-75 285.0 267 51.7
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 1.2e-74 284.3 312 46.2
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.2e-74 284.3 267 51.7
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 7.7e-74 281.6 283 48.8
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.0e-73 281.2 285 50.5
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 1.0e-73 281.2 280 48.2
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.0e-73 281.2 281 49.5
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 1.3e-73 280.8 280 51.8
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.7e-73 280.4 282 50.0
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.7e-73 280.4 274 50.4
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.9e-73 279.6 301 48.5
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 6.5e-73 278.5 264 53.4
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.1e-72 277.7 319 46.4
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 5.5e-72 275.4 295 45.8
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 5.5e-72 275.4 307 46.6
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.2e-71 274.2 301 47.8
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 2.1e-71 273.5 264 51.9
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 2.7e-71 273.1 308 47.1
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.7e-71 273.1 314 44.6
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 6.1e-71 271.9 265 52.8
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 7.9e-71 271.6 265 52.8
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.0e-70 271.2 324 48.8
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 3.0e-70 269.6 311 45.7
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 3.9e-70 269.2 275 48.0
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 6.7e-70 268.5 313 45.7
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.1e-69 267.7 314 44.9
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 2.0e-69 266.9 306 45.8
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.0e-69 266.9 267 50.9
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 2.5e-69 266.5 275 48.4
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.5e-69 266.5 274 48.2
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 3.3e-69 266.2 277 49.1
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.3e-69 265.8 316 47.5
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 5.7e-69 265.4 272 47.8
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 5.7e-69 265.4 312 46.5
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 7.4e-69 265.0 316 45.6
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 9.7e-69 264.6 313 43.8
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.8e-68 262.3 274 47.8
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 3.1e-67 259.6 311 45.7
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.5e-66 257.3 278 46.8
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.0e-66 256.9 293 44.0
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.0e-65 254.6 302 41.4
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.0e-65 254.6 276 48.9
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 2.2e-65 253.4 265 46.8
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.1e-64 251.1 314 40.8
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.1e-64 251.1 306 40.2
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.1e-64 251.1 312 44.6
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.2e-64 249.6 266 44.0
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 4.2e-64 249.2 283 46.3
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.2e-63 247.7 340 40.9
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.6e-63 247.3 298 43.0
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 4.7e-63 245.7 235 54.9
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 6.7e-62 241.9 308 43.2
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 5.7e-61 238.8 303 45.5
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 9.1e-59 231.5 270 44.8
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.0e-58 230.3 202 59.9
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.0e-58 230.3 202 59.9
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 6.5e-57 225.3 288 42.0
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 3.2e-56 223.0 203 51.2
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.2e-56 222.6 239 47.7
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.2e-55 221.1 291 40.5
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.6e-55 220.7 298 43.0
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.1e-55 220.3 281 41.3
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.0e-54 218.0 249 43.8
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 5.2e-54 215.7 199 55.8
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 5.2e-54 215.7 241 44.8
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 6.7e-54 215.3 266 44.0
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.9e-48 197.2 263 38.8
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 2.0e-45 187.2 262 37.4
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.2e-44 183.7 172 52.3
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.4e-43 181.0 260 40.8
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 2.4e-43 180.3 178 50.0
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 4.1e-43 179.5 214 45.8
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 4.1e-43 179.5 266 38.3
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.8e-41 172.9 301 36.5
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 6.1e-39 165.6 267 34.5
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.4e-38 164.5 265 36.2
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 8.0e-31 138.7 206 39.3
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 3.9e-25 119.8 98 59.2
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.5e-21 107.8 203 31.5
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.0e-18 97.4 123 39.8
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.4e-14 84.7 112 48.2
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.4e-14 84.7 112 48.2
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 2.3e-14 84.0 88 46.6
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.2e-13 81.6 95 41.1
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 2.0e-13 80.9 230 25.7
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 4.9e-12 76.3 260 26.2
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.9e-12 76.3 132 35.6
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 9.2e-11 72.0 78 46.2
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.6e-10 71.2 286 23.8


User provided reference genes

Program Settings