Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3318 Papaver somniferum HOM05D000029 ORTHO05D003879 1.4e-81 307.8 444 100.0
PSO782G3570 Papaver somniferum HOM05D000029 ORTHO05D003879 4.7e-21 106.7 91 65.9
Prupe.8G051700 Prunus persica HOM05D000029 ORTHO05D003879 5.2e-20 103.2 84 63.1
Prupe.8G056100 Prunus persica HOM05D000029 ORTHO05D003879 1.2e-19 102.1 84 61.9
Rhsim10G0041300 Rhododendron simsii HOM05D000029 ORTHO05D003879 5.8e-19 99.8 80 60.0
QL02p034028 Quercus lobata HOM05D000029 ORTHO05D003879 3.7e-18 97.1 84 60.7
CANSAT64G2826 Cannabis sativa HOM05D000029 ORTHO05D003879 4.9e-18 96.7 80 58.8
RcHm_v2.0_Chr6g0272091 Rosa chinensis HOM05D000029 ORTHO05D003879 4.9e-18 96.7 84 57.1
CSS0001053 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 6.4e-18 96.3 84 58.3
CSS0010817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 6.4e-18 96.3 84 58.3
CSS0010851 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 6.4e-18 96.3 84 58.3
Glyma.16G156100 Glycine max HOM05D000029 ORTHO05D003879 8.3e-18 95.9 88 55.7
Glyma.16G156200 Glycine max HOM05D000029 ORTHO05D003879 8.3e-18 95.9 88 55.7
CSS0006375 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.1e-17 95.5 80 60.0
Cc00_g11880 Coffea canephora HOM05D000029 ORTHO05D003879 1.4e-17 95.1 95 54.7
vmacro08239 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 1.4e-17 95.1 84 58.3
CSS0046817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.9e-17 94.7 84 58.3
Rhsim10G0041900 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.9e-17 94.7 80 57.5
Rhsim10G0034100 Rhododendron simsii HOM05D000029 ORTHO05D003879 2.4e-17 94.4 84 58.3
PSO782G2115 Papaver somniferum HOM05D000029 ORTHO05D003879 4.1e-17 93.6 58 84.5
TAR628G0281 Trochodendron aralioides HOM05D000029 ORTHO05D003879 4.1e-17 93.6 86 59.3
CDE06G2283 Ceratophyllum demersum HOM05D000029 ORTHO05D003879 5.4e-17 93.2 83 60.2
CSS0047735 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 7.0e-17 92.8 80 58.8
Phvul.004G084688 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 7.0e-17 92.8 84 58.3
Phvul.004G085076 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 7.0e-17 92.8 84 58.3
RhsimUnG0063100 Rhododendron simsii HOM05D000029 ORTHO05D003879 7.0e-17 92.8 82 54.9
vmacro12494 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 7.0e-17 92.8 84 56.0
MSTRG.1520 Avicennia marina HOM05D000029 ORTHO05D003879 9.2e-17 92.4 84 57.1
Peaxi162Scf00310g00823 Petunia axillaris HOM05D000029 ORTHO05D003879 9.2e-17 92.4 84 56.0
Solyc11g017280.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 1.2e-16 92.0 84 57.1
PGSC0003DMG400009238 Solanum tuberosum HOM05D000029 ORTHO05D003879 1.2e-16 92.0 84 57.1
Actinidia23329 Actinidia chinensis HOM05D000029 ORTHO05D003879 1.6e-16 91.7 84 56.0
MD10G1047000 Malus domestica HOM05D000029 ORTHO05D003879 1.6e-16 91.7 90 56.7
Atru.chr13.1828 Acer truncatum HOM05D000029 ORTHO05D003879 2.0e-16 91.3 90 54.4
arahy.Tifrunner.gnm1.ann1.TX2FLU Arachis hypogaea HOM05D000029 ORTHO05D003879 2.0e-16 91.3 84 57.1
CAN.G342.4 Capsicum annuum HOM05D000029 ORTHO05D003879 2.0e-16 91.3 84 56.0
vmacro05722 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 2.0e-16 91.3 79 57.0
Eucgr.L01480 Eucalyptus grandis HOM05D000029 ORTHO05D003879 2.7e-16 90.9 84 53.6
Nitab4.5_0010911g0020 Nicotiana tabacum HOM05D000029 ORTHO05D003879 2.7e-16 90.9 84 54.8
Sc01g0001730 Simmondsia chinensis HOM05D000029 ORTHO05D003879 2.7e-16 90.9 85 55.3
FvH4_2g12120 Fragaria vesca HOM05D000029 ORTHO05D003879 3.5e-16 90.5 84 57.1
FAN24G0359 Fragaria x ananassa HOM05D000029 ORTHO05D003879 3.5e-16 90.5 84 57.1
MELO3C023665.2 Cucumis melo HOM05D000029 ORTHO05D003879 4.6e-16 90.1 89 53.9
vmacro05721 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 4.6e-16 90.1 80 57.5
Atru.chr13.1802 Acer truncatum HOM05D000029 ORTHO05D003879 6.0e-16 89.7 84 53.6
ClCG09G010450 Citrullus lanatus HOM05D000029 ORTHO05D003879 7.8e-16 89.4 89 53.9
Haze_17910 Corylus avellana HOM05D000029 ORTHO05D003879 1.0e-15 89.0 80 58.8
FAN27G1538 Fragaria x ananassa HOM05D000029 ORTHO05D003879 1.0e-15 89.0 83 56.6
Potri.013G114200 Populus trichocarpa HOM05D000029 ORTHO05D003879 1.0e-15 89.0 85 50.6
Atru.chr13.1823 Acer truncatum HOM05D000029 ORTHO05D003879 1.3e-15 88.6 94 52.1
RcHm_v2.0_Chr1g0316221 Rosa chinensis HOM05D015504 ORTHO05D003879 1.3e-15 88.6 84 54.8
Atru.chr13.1801 Acer truncatum HOM05D000029 ORTHO05D003879 1.7e-15 88.2 85 55.3
Eucgr.F04133 Eucalyptus grandis HOM05D000029 ORTHO05D003879 1.7e-15 88.2 84 54.8
MD10G1047300 Malus domestica HOM05D000029 ORTHO05D003879 1.7e-15 88.2 90 54.4
Sopen11g009160 Solanum pennellii HOM05D000029 ORTHO05D003879 1.7e-15 88.2 84 54.8
TAR376G0621 Trochodendron aralioides HOM05D000029 ORTHO05D003879 1.7e-15 88.2 64 68.8
Dinv08018 Davidia involucrata HOM05D000029 ORTHO05D003879 2.3e-15 87.8 84 54.8
SalBow6G0392 Salvia bowleyana HOM05D000029 ORTHO05D003879 2.3e-15 87.8 84 53.6
CiPaw.15G082400 Carya illinoinensis HOM05D000029 ORTHO05D003879 3.0e-15 87.4 80 56.2
CsaV3_7G024110 Cucumis sativus L. HOM05D000029 ORTHO05D003879 3.0e-15 87.4 80 56.2
FvH4_5g16590 Fragaria vesca HOM05D000029 ORTHO05D003879 3.0e-15 87.4 87 52.9
Lj5g0012115 Lotus japonicus HOM05D000029 ORTHO05D003879 3.0e-15 87.4 80 57.5
RhsimUnG0063000 Rhododendron simsii HOM05D000029 ORTHO05D003879 3.0e-15 87.4 80 56.2
Sabra19G0095900 Salix brachista HOM05D000029 ORTHO05D003879 3.0e-15 87.4 80 55.0
Dinv41693 Davidia involucrata HOM05D000029 ORTHO05D003879 3.9e-15 87.0 104 49.0
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 3.9e-15 87.0 84 52.4
SalBow6G7126 Salvia bowleyana HOM05D000029 ORTHO05D003879 3.9e-15 87.0 84 53.6
Rhsim10G0034000 Rhododendron simsii HOM05D000029 ORTHO05D003879 5.0e-15 86.7 84 54.8
Atru.chr13.1800 Acer truncatum HOM05D000029 ORTHO05D003879 6.6e-15 86.3 90 53.3
A08p08250 Brassica napus HOM05D000029 ORTHO05D003879 6.6e-15 86.3 82 56.1
BraA08t32843Z Brassica rapa HOM05D000029 ORTHO05D003879 6.6e-15 86.3 82 56.1
FAN08G2074 Fragaria x ananassa HOM05D000029 ORTHO05D003879 6.6e-15 86.3 87 52.9
Manes.18G100200 Manihot esculenta HOM05D000029 ORTHO05D003879 6.6e-15 86.3 81 56.8
Potri.019G084800 Populus trichocarpa HOM05D000029 ORTHO05D003879 6.6e-15 86.3 81 54.3
SalBow6G0200 Salvia bowleyana HOM05D000029 ORTHO05D003879 6.6e-15 86.3 84 53.6
SalBow6G0778 Salvia bowleyana HOM05D000029 ORTHO05D003879 6.6e-15 86.3 84 53.6
Sed0023164 Sechium edule HOM05D000029 ORTHO05D003879 8.6e-15 85.9 89 51.7
Gohir.D09G114100 Gossypium hirsutum HOM05D000029 ORTHO05D003879 1.1e-14 85.5 85 52.9
Gorai.006G131800 Gossypium raimondii HOM05D000029 ORTHO05D003879 1.1e-14 85.5 85 52.9
vmacro22381 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 1.1e-14 85.5 80 53.8
BcaB04g17876 Brassica carinata HOM05D000029 ORTHO05D003879 1.5e-14 85.1 82 56.1
Cfa018196 Carpinus fangiana HOM05D000029 ORTHO05D003879 1.5e-14 85.1 81 56.8
Haze_17915 Corylus avellana HOM05D000029 ORTHO05D003879 1.5e-14 85.1 78 56.4
Nitab4.5_0000560g0040 Nicotiana tabacum HOM05D000029 ORTHO05D003879 1.5e-14 85.1 67 61.2
Cc00_g03680 Coffea canephora HOM05D000029 ORTHO05D003879 1.9e-14 84.7 68 60.3
Manes.02G190900 Manihot esculenta HOM05D000029 ORTHO05D003879 2.5e-14 84.3 85 54.1
arahy.Tifrunner.gnm1.ann1.BISG48 Arachis hypogaea HOM05D000029 ORTHO05D003879 3.3e-14 84.0 84 53.6
BolC8t47856H Brassica oleracea HOM05D000029 ORTHO05D003879 3.3e-14 84.0 83 54.2
TWI34G0629 Tripterygium wilfordii HOM05D000029 ORTHO05D003879 3.3e-14 84.0 85 52.9
Lalb_Chr19g0129791 Lupinus albus HOM05D000029 ORTHO05D003879 4.3e-14 83.6 84 51.2
BcaC07g37539 Brassica carinata HOM05D000029 ORTHO05D003879 5.6e-14 83.2 82 54.9
Thhalv10006707m.g Eutrema salsugineum HOM05D000029 ORTHO05D003879 7.3e-14 82.8 82 52.4
Gohir.A09G117200 Gossypium hirsutum HOM05D000029 ORTHO05D003879 7.3e-14 82.8 85 51.8
Gohir.A09G117301 Gossypium hirsutum HOM05D000029 ORTHO05D003879 7.3e-14 82.8 85 51.8
MD05G1041000 Malus domestica HOM05D000029 ORTHO05D003879 9.5e-14 82.4 64 65.6
CiPaw.15G082500 Carya illinoinensis HOM05D000029 ORTHO05D003879 1.2e-13 82.0 84 51.2
Lj4C507T2 Lonicera japonica HOM05D000029 ORTHO05D003879 1.2e-13 82.0 84 50.0
Sabra19G0096000 Salix brachista HOM05D000029 ORTHO05D003879 1.6e-13 81.6 85 51.8
Thecc.08G181500 Theobroma cacao HOM05D000029 ORTHO05D003879 1.6e-13 81.6 117 43.6
AL1G48980 Arabidopsis lyrata HOM05D000029 ORTHO05D003879 2.1e-13 81.3 82 53.7
Lj4A516T35 Lonicera japonica HOM05D000029 ORTHO05D003879 2.8e-13 80.9 84 50.0
Sabra19G0096100 Salix brachista HOM05D000029 ORTHO05D003879 2.8e-13 80.9 85 51.8
Nn1g05578 Nelumbo nucifera HOM05D000029 ORTHO05D003879 3.6e-13 80.5 83 53.0
PGR102G0708 Punica granatum HOM05D000029 ORTHO05D003879 3.6e-13 80.5 86 53.5
Rhsim06G0097000 Rhododendron simsii HOM05D000029 ORTHO05D003879 4.7e-13 80.1 67 58.2
Carub.0001s3255 Capsella rubella HOM05D000029 ORTHO05D003879 6.2e-13 79.7 82 51.2
TPR.G8832 Trifolium pratense HOM05D000029 ORTHO05D003879 6.2e-13 79.7 78 55.1
Psat0s2229g0040 Pisum sativum HOM05D000029 ORTHO05D003879 8.1e-13 79.3 85 54.1
RcHm_v2.0_Chr6g0272061 Rosa chinensis HOM05D000029 ORTHO05D003879 8.1e-13 79.3 84 50.0
MSTRG.22443 Avicennia marina HOM05D000029 ORTHO05D003879 1.1e-12 79.0 84 50.0
Cfa018200 Carpinus fangiana HOM05D000029 ORTHO05D003879 1.8e-12 78.2 83 55.4
Nitab4.5_0000560g0090 Nicotiana tabacum HOM05D000029 ORTHO05D003879 1.8e-12 78.2 67 59.7
EL10Ac1g00073 Beta vulgaris HOM05D000029 ORTHO05D003879 4.0e-12 77.0 81 51.9
MBI17_g15289_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 4.0e-12 77.0 85 49.4
Nitab4.5_0010911g0010 Nicotiana tabacum HOM05D000029 ORTHO05D003879 4.0e-12 77.0 84 48.8
Sp1g29610 Schrenkiella parvula HOM05D000029 ORTHO05D003879 5.2e-12 76.6 82 52.4
Oeu030006.1 Olea europaea HOM05D016129 ORTHO05D003798 8.9e-12 75.9 78 48.7
AT1G34420 Arabidopsis thaliana HOM05D000029 ORTHO05D003879 1.5e-11 75.1 82 48.8
Hund27081 Selenicereus undatus HOM05D000029 ORTHO05D003879 1.5e-11 75.1 70 54.3
SalBow6G2947 Salvia bowleyana HOM05D000029 ORTHO05D003879 2.0e-11 74.7 80 50.0
SalBow6G4183 Salvia bowleyana HOM05D000029 ORTHO05D003879 2.0e-11 74.7 80 50.0
Ciclev10000182m.g Citrus clementina HOM05D000029 ORTHO05D003879 4.4e-11 73.6 90 47.8
Solyc11g017270.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 4.4e-11 73.6 61 60.7
Lsat_1_v5_gn_1_10521 Lactuca sativa HOM05D000029 ORTHO05D003879 1.3e-10 72.0 75 50.7
ATR0152G022 Amborella trichopoda HOM05D000029 ORTHO05D003879 2.9e-10 70.9 81 48.1
AUR62004657 Chenopodium quinoa HOM05D000029 ORTHO05D003879 3.7e-10 70.5 68 54.4
Ca_10609_v3 Cicer arietinum L. HOM05D000029 ORTHO05D003879 3.7e-10 70.5 78 48.7
Migut.N03343 Erythranthe guttata HOM05D000029 ORTHO05D003879 6.4e-10 69.7 81 46.9
Os12g0182300 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D003879 8.3e-10 69.3 92 43.5
Lalb_Chr03g0035901 Lupinus albus HOM05D000029 ORTHO05D003879 1.1e-09 68.9 78 50.0
Medtr1g096270 Medicago truncatula HOM05D000029 ORTHO05D003879 1.9e-09 68.2 66 57.6
AUR62023574 Chenopodium quinoa HOM05D000029 ORTHO05D003879 2.4e-09 67.8 67 53.7
SGA_v2.0_scaffold149G36603 Striga asiatica HOM05D000029 ORTHO05D003879 5.4e-09 66.6 80 51.2
Duzib116G0477 Durio zibethinus HOM05D000029 ORTHO05D003879 9.2e-09 65.9 85 44.7
HanXRQChr04g0107431 Helianthus annuus HOM05D000029 ORTHO05D003879 1.2e-08 65.5 83 48.2
Duzib177G1182 Durio zibethinus HOM05D000029 ORTHO05D003879 1.6e-08 65.1 85 44.7
HanXRQChr04g0107461 Helianthus annuus HOM05D000029 ORTHO05D003879 2.1e-08 64.7 89 44.9
PSO170G5730 Papaver somniferum HOM05D000029 ORTHO05D003879 5.1e-07 60.1 81 45.7
MBI09_g08446_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 6.6e-07 59.7 80 42.5
Eucgr.F04130 Eucalyptus grandis HOM05D000029 ORTHO05D003879 1.5e-06 58.5 90 43.3
THA.LOC104806785 Tarenaya hassleriana HOM05D000029 ORTHO05D003879 1.5e-06 58.5 82 41.5
Potri.019G084700 Populus trichocarpa HOM05D000029 ORTHO05D003879 2.5e-06 57.8 85 42.4
FvH4_7g14030 Fragaria vesca HOM05D000071 ORTHO05D000029 3.3e-06 57.4 81 39.5
SEGI_35620 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 4.3e-06 57.0 83 42.2
MD01G1181100 Malus domestica HOM05D000071 ORTHO05D000029 5.6e-06 56.6 59 47.5
HanXRQChr04g0107451 Helianthus annuus HOM05D000029 ORTHO05D003879 7.3e-06 56.2 76 46.1


User provided reference genes

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