Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 0.0e+00 1211.8 617 100.0
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 0.0e+00 1206.4 617 99.5
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.2e-304 1049.3 616 86.4
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 8.4e-303 1043.1 614 85.7
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 6.5e-295 1016.9 628 82.5
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 3.7e-290 1001.1 612 82.7
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 1.1e-289 999.6 614 82.6
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.1e-289 998.0 613 81.7
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 6.9e-289 996.9 614 82.6
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 1.5e-288 995.7 613 81.9
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.5e-288 995.7 614 81.8
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.4e-288 994.6 613 81.7
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 3.8e-287 991.1 612 81.4
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-286 989.6 613 80.9
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 4.2e-286 987.6 613 81.1
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 2.1e-285 985.3 614 81.1
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 7.9e-285 983.4 615 80.2
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 7.9e-285 983.4 614 80.5
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.0e-284 983.0 613 80.9
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.1e-284 980.7 622 79.7
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 8.8e-284 979.9 615 79.2
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 8.8e-284 979.9 613 80.9
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 1.5e-283 979.2 614 80.3
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 4.3e-283 977.6 613 80.4
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 5.7e-283 977.2 614 80.1
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 5.7e-283 977.2 636 78.3
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 2.8e-282 974.9 612 80.1
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 6.3e-282 973.8 612 79.4
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 6.3e-282 973.8 613 79.4
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 8.2e-282 973.4 612 79.9
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 8.2e-282 973.4 613 80.1
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.4e-281 972.6 614 80.0
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 1.8e-281 972.2 613 79.3
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.8e-281 972.2 615 81.0
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 1.8e-281 972.2 613 80.6
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 2.4e-281 971.8 613 79.0
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 3.1e-281 971.5 614 79.5
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.1e-281 971.1 624 79.0
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 3.8e-279 964.5 612 78.6
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 3.2e-278 961.4 614 79.3
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 4.2e-278 961.1 616 78.9
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.6e-277 958.0 651 75.7
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 6.1e-277 957.2 614 79.3
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 1.8e-276 955.7 612 79.2
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.8e-276 955.7 612 78.1
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 5.1e-276 954.1 612 78.1
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 8.8e-276 953.4 612 77.5
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 2.0e-275 952.2 610 77.9
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.6e-275 951.8 612 77.5
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 3.3e-275 951.4 612 77.5
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.3e-274 949.5 615 77.7
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.7e-274 949.1 614 77.5
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 1.7e-274 949.1 614 77.9
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.8e-273 945.7 612 77.1
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 5.3e-273 944.1 610 77.0
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 9.1e-273 943.3 614 77.4
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 8.5e-271 936.8 613 76.7
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 3.2e-270 934.9 641 77.2
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 7.2e-270 933.7 680 71.9
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 7.2e-270 933.7 619 75.9
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.2e-269 932.9 614 76.5
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.2e-269 932.9 614 76.5
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 8.0e-269 930.2 645 73.5
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 1.8e-268 929.1 607 76.1
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 3.0e-268 928.3 608 76.3
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 4.4e-267 924.5 749 66.8
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 7.4e-267 923.7 639 73.2
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 1.3e-266 922.9 612 75.8
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.4e-265 919.5 612 75.0
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 2.6e-264 915.2 610 74.9
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 2.6e-264 915.2 613 75.4
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.0e-263 913.3 610 74.6
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 2.2e-263 912.1 613 76.8
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 2.9e-263 911.8 619 74.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 5.5e-262 907.5 612 75.7
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 6.7e-260 900.6 612 74.3
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 4.4e-259 897.9 572 78.3
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 4.8e-258 894.4 538 82.9
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.4e-257 892.1 613 73.4
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.7e-255 885.9 572 77.6
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.9e-255 885.2 612 73.0
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.5e-254 882.1 612 72.9
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 4.7e-253 877.9 612 72.2
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 2.6e-251 872.1 595 72.9
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.1e-249 866.7 614 71.3
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 5.9e-248 860.9 597 72.2
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 4.2e-246 854.7 628 70.5
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.0e-244 850.1 612 71.2
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 6.3e-242 840.9 514 80.9
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 9.2e-241 837.0 514 80.7
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 3.1e-236 822.0 619 69.1
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 6.8e-236 820.8 575 73.2
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 2.3e-228 795.8 615 63.4
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 2.2e-226 789.3 510 79.2
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 3.0e-223 778.9 621 63.0
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 6.0e-216 754.6 466 79.4
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 3.6e-213 745.3 612 61.1
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 7.1e-209 731.1 557 70.4
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 2.3e-207 726.1 444 82.2
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.6e-205 718.8 555 68.1
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.9e-193 679.9 644 53.4
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.8e-167 593.6 612 50.8
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 9.1e-164 581.3 363 81.3
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 2.9e-162 576.2 612 49.2
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 7.0e-156 555.1 358 79.9
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.2e-152 544.3 340 82.6
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.2e-152 544.3 488 64.8
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 4.5e-147 525.8 362 73.8
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 2.9e-138 496.5 392 67.6
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 5.2e-135 485.7 599 48.6
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 5.0e-130 469.2 511 48.3
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 7.8e-107 392.1 374 61.0
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 6.6e-106 389.0 279 74.9
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 6.6e-98 362.5 455 49.9
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 6.0e-75 286.2 173 80.3
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 2.1e-72 277.7 169 81.1
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.6e-70 270.8 186 69.9
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.4e-55 221.9 147 78.9
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.1e-55 220.7 134 80.6
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.0e-53 215.7 142 78.2
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 7.9e-51 206.1 138 73.2
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 1.0e-50 205.7 115 84.3
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 1.3e-48 198.7 122 81.1
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.2e-46 192.2 149 65.8
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.8e-45 187.2 103 84.5
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 3.0e-42 177.6 104 81.7
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 7.7e-38 162.9 176 51.1
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-35 155.6 103 76.7
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 3.7e-32 144.1 90 81.1
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 3.2e-28 131.0 102 60.8
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 8.0e-27 126.3 109 60.6
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.2e-24 118.2 84 72.6
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.7e-21 108.6 72 73.6
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.1e-20 105.9 104 63.5
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 8.0e-19 99.8 56 75.0
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.8e-18 98.6 75 66.7
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 4.0e-18 97.4 55 74.5
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 6.8e-18 96.7 54 68.5
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 6.8e-18 96.7 54 68.5
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 8.8e-18 96.3 56 73.2
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 2.7e-14 84.7 49 73.5
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 7.7e-14 83.2 54 72.2
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 2.3e-13 81.6 44 84.1
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 4.3e-12 77.4 53 60.4
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 2.0e-09 68.6 57 49.1
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 5.7e-09 67.0 48 72.9
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 1.3e-08 65.9 80 42.5
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.7e-08 64.3 38 73.7
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 7.8e-06 56.6 34 79.4


User provided reference genes

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