Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3079 Papaver somniferum HOM05D003774 ORTHO05D010174 2.7e-167 592.0 323 100.0
PSO782G0406 Papaver somniferum HOM05D003774 ORTHO05D010174 8.4e-137 490.7 271 98.5
RcHm_v2.0_Chr7g0227131 Rosa chinensis HOM05D003774 ORTHO05D010174 5.7e-85 318.5 253 67.6
MBI03_g45112_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 1.7e-84 317.0 301 62.8
CiPaw.07G235600 Carya illinoinensis HOM05D003774 ORTHO05D010174 6.3e-84 315.1 245 65.3
FvH4_5g31600 Fragaria vesca HOM05D003774 ORTHO05D010174 2.0e-82 310.1 252 65.5
FAN08G2588 Fragaria x ananassa HOM05D003774 ORTHO05D010174 3.5e-82 309.3 252 64.7
Prupe.1G555700 Prunus persica HOM05D003774 ORTHO05D010174 3.5e-82 309.3 293 59.4
CANSAT25G1591 Cannabis sativa HOM05D003774 ORTHO05D010174 4.5e-82 308.9 261 63.2
FAN07G1602 Fragaria x ananassa HOM05D003774 ORTHO05D010174 3.8e-81 305.8 252 64.3
Cfa012970 Carpinus fangiana HOM05D003774 ORTHO05D010174 1.1e-80 304.3 245 64.5
Actinidia29409 Actinidia chinensis HOM05D003774 ORTHO05D010174 7.3e-80 301.6 245 67.8
Lsat_1_v5_gn_1_25800 Lactuca sativa HOM05D003774 ORTHO05D010174 7.3e-80 301.6 245 64.5
MD14G1036300 Malus domestica HOM05D003774 ORTHO05D010174 1.2e-79 300.8 270 63.0
HanXRQChr02g0036571 Helianthus annuus HOM05D003774 ORTHO05D010174 1.6e-79 300.4 245 64.1
Manes.18G106000 Manihot esculenta HOM05D003774 ORTHO05D010174 4.7e-79 298.9 281 58.4
Thecc.08G192700 Theobroma cacao HOM05D003774 ORTHO05D010174 3.0e-78 296.2 245 66.5
PGR042G3332 Punica granatum HOM05D003774 ORTHO05D010174 1.2e-77 294.3 263 61.2
Eucgr.F02989 Eucalyptus grandis HOM05D003774 ORTHO05D010174 1.5e-77 293.9 243 64.6
TWI14G1031 Tripterygium wilfordii HOM05D003774 ORTHO05D010174 1.5e-77 293.9 255 64.3
DCAR_017444 Daucus carota HOM05D003774 ORTHO05D010174 4.4e-77 292.4 243 60.9
BraA09t38729Z Brassica rapa HOM05D003774 ORTHO05D010174 9.8e-77 291.2 246 64.6
Ciclev10003535m.g Citrus clementina HOM05D003774 ORTHO05D010174 9.8e-77 291.2 255 62.0
PGSC0003DMG400026729 Solanum tuberosum HOM05D003774 ORTHO05D010174 1.7e-76 290.4 270 60.7
THA.LOC104816539 Tarenaya hassleriana HOM05D003774 ORTHO05D010174 1.7e-76 290.4 246 63.4
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 2.9e-76 289.7 270 60.4
Sp1g30100 Schrenkiella parvula HOM05D003774 ORTHO05D010174 3.7e-76 289.3 300 58.3
Atru.chr13.2372 Acer truncatum HOM05D003774 ORTHO05D010174 6.4e-76 288.5 265 61.1
AL1G50100 Arabidopsis lyrata HOM05D003774 ORTHO05D010174 6.4e-76 288.5 244 63.9
MBI03_g46804_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 1.8e-75 287.0 265 63.8
Carub.0347s0001 Capsella rubella HOM05D003774 ORTHO05D010174 5.4e-75 285.4 246 62.2
Solyc11g027830.2 Solanum lycopersicum HOM05D003774 ORTHO05D010174 5.4e-75 285.4 293 57.3
Thhalv10001819m.g Eutrema salsugineum HOM05D003774 ORTHO05D010174 9.2e-75 284.6 246 63.4
BcaC08g43723 Brassica carinata HOM05D003774 ORTHO05D010174 2.0e-74 283.5 287 57.1
BolC6t36225H Brassica oleracea HOM05D003774 ORTHO05D010174 2.0e-74 283.5 287 57.1
A09p31890 Brassica napus HOM05D003774 ORTHO05D010174 2.7e-74 283.1 287 56.8
Nitab4.5_0001463g0060 Nicotiana tabacum HOM05D003774 ORTHO05D010174 2.7e-74 283.1 257 59.1
Peaxi162Scf00688g00424 Petunia axillaris HOM05D003774 ORTHO05D010174 2.7e-74 283.1 254 59.8
CsaV3_5G040540 Cucumis sativus L. HOM05D003774 ORTHO05D010174 4.6e-74 282.3 246 59.8
Sopen11g022590 Solanum pennellii HOM05D003774 ORTHO05D010174 7.8e-74 281.6 300 55.7
C06p11060 Brassica napus HOM05D003774 ORTHO05D010174 2.3e-73 280.0 287 56.4
CAN.G1483.1 Capsicum annuum HOM05D003774 ORTHO05D010174 4.3e-72 275.8 284 55.6
BcaB07g33098 Brassica carinata HOM05D003774 ORTHO05D010174 9.5e-72 274.6 287 57.1
Nitab4.5_0005616g0030 Nicotiana tabacum HOM05D003774 ORTHO05D010174 1.6e-71 273.9 307 52.1
GSVIVG01026088001 Vitis vinifera HOM05D003774 ORTHO05D010174 2.1e-71 273.5 201 69.2
Migut.C01324 Erythranthe guttata HOM05D003774 ORTHO05D010174 4.0e-70 269.2 239 60.7
Cc00_g20990 Coffea canephora HOM05D003774 ORTHO05D010174 1.2e-69 267.7 258 57.4
Haze_21314 Corylus avellana HOM05D003774 ORTHO05D010174 1.2e-69 267.7 251 59.0
SEGI_18058 Sequoiadendron giganteum HOM05D003774 ORTHO05D010174 9.8e-69 264.6 243 56.4
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.7e-65 253.8 248 57.3
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 1.1e-64 251.1 209 60.8
MD04G1056900 Malus domestica HOM05D003774 ORTHO05D010174 2.5e-64 250.0 209 63.6
ClCG08G000190 Citrullus lanatus HOM05D003774 ORTHO05D010174 4.7e-63 245.7 269 50.9
Potri.013G105500 Populus trichocarpa HOM05D003774 ORTHO05D010174 4.4e-61 239.2 214 61.7
Cpa.g.sc66.3 Carica papaya HOM05D003774 ORTHO05D010174 3.7e-60 236.1 203 62.6
COL.COLO4_24648 Corchorus olitorius HOM05D003774 ORTHO05D010174 3.7e-60 236.1 234 57.7
AT1G35340 Arabidopsis thaliana HOM05D003774 ORTHO05D010174 9.2e-59 231.5 208 60.1
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 6.6e-57 225.3 193 62.2
Oeu013897.1 Olea europaea HOM05D003774 ORTHO05D010174 6.6e-57 225.3 208 57.7
Pp3c18_9200 Physcomitrium patens HOM05D003774 ORTHO05D010174 2.0e-53 213.8 250 46.0
Zm00001eb169160 Zea mays HOM05D003774 ORTHO05D010174 5.8e-53 212.2 288 45.8
Dinv41759 Davidia involucrata HOM05D003774 ORTHO05D010174 4.6e-50 202.6 209 55.5
Mapoly0085s0045 Marchantia polymorpha HOM05D003774 ORTHO05D010174 8.7e-49 198.4 261 43.7
MELO3C022227.2 Cucumis melo HOM05D003774 ORTHO05D010174 5.3e-38 162.5 246 42.3
TAR628G1250 Trochodendron aralioides HOM05D003774 ORTHO05D010174 1.0e-33 148.3 178 55.1
CARHR034170 Cardamine hirsuta HOM05D003774 ORTHO05D010174 6.9e-30 135.6 137 58.4
Lj7A284G37 Lonicera japonica HOM05D003774 ORTHO05D010174 7.6e-29 132.1 133 57.1
Rhsim11G0052800 Rhododendron simsii HOM05D003774 ORTHO05D000166 1.3e-28 131.3 179 50.8
MSTRG.1569 Avicennia marina HOM05D003774 ORTHO05D010174 1.6e-26 124.4 123 57.7
Lj7A284T38 Lonicera japonica HOM05D003774 ORTHO05D010174 7.9e-26 122.1 101 65.3
AagrBONN_evm.TU.Sc2ySwM_340.403 Anthoceros agrestis HOM05D000737 ORTHO05D000581 2.3e-25 120.6 232 36.2
FvH4_5g26640 Fragaria vesca HOM05D003774 ORTHO05D010174 1.9e-19 100.9 125 54.4
Os11g0219000 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D010174 6.3e-15 85.9 109 48.6
MD15G1405700 Malus domestica HOM05D003774 ORTHO05D010174 2.4e-14 84.0 149 37.6
MCO03G373 Micromonas commoda HOM05D003774 ORTHO05D010174 3.6e-10 70.1 137 33.6
Cre16.g670500 Chlamydomonas reinhardtii HOM05D003774 ORTHO05D010174 4.3e-08 63.2 218 24.8


User provided reference genes

Program Settings