Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 0.0e+00 1257.7 658 100.0
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 0.0e+00 1124.4 663 89.9
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 6.6e-229 797.7 649 65.0
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 2.6e-225 785.8 650 64.0
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.1e-223 780.4 655 63.4
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 8.6e-221 770.8 657 62.6
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 1.3e-216 756.9 648 63.0
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.7e-216 756.5 648 62.2
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 2.9e-216 755.7 667 61.5
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 2.4e-215 752.7 651 61.8
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 4.1e-215 751.9 649 61.3
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 2.1e-214 749.6 652 63.7
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 1.7e-213 746.5 666 61.1
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 3.9e-213 745.3 651 60.2
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 6.6e-213 744.6 665 60.0
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 6.6e-213 744.6 654 61.5
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 3.3e-212 742.3 651 59.9
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.2e-211 740.3 651 61.4
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 8.1e-211 737.6 652 61.3
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.1e-210 737.3 651 60.4
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 1.8e-210 736.5 652 62.1
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 6.8e-210 734.6 654 60.6
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 7.6e-209 731.1 654 60.9
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 1.4e-207 726.9 650 60.0
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.4e-207 726.9 644 59.3
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 2.4e-207 726.1 642 60.1
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 4.1e-207 725.3 652 59.2
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 5.4e-207 724.9 652 60.9
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 5.4e-207 724.9 647 59.5
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.3e-205 719.5 651 60.2
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 2.3e-205 719.5 450 87.1
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 3.0e-205 719.2 644 60.7
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 5.1e-205 718.4 643 58.6
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 8.6e-205 717.6 647 59.0
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 1.1e-204 717.2 650 59.4
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 2.5e-204 716.1 647 58.4
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.6e-203 713.4 654 58.0
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 2.1e-203 713.0 649 58.2
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.8e-203 712.6 646 58.0
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 6.2e-203 711.4 664 60.7
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.8e-202 709.9 646 60.1
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 6.8e-202 708.0 650 59.2
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.2e-201 707.2 645 59.4
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 2.6e-201 706.1 648 57.4
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 3.4e-201 705.7 659 58.3
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 3.4e-201 705.7 648 59.7
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 3.8e-200 702.2 638 59.2
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 4.9e-200 701.8 643 58.2
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 1.1e-199 700.7 644 57.9
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 3.2e-199 699.1 674 56.2
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 1.3e-197 693.7 648 58.8
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 3.0e-197 692.6 650 57.2
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.0e-197 692.6 690 55.8
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 5.1e-197 691.8 650 58.0
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 1.1e-196 690.6 650 57.7
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.9e-196 689.9 623 60.4
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 5.6e-196 688.3 653 55.7
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 1.6e-195 686.8 653 56.5
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.6e-195 686.8 654 56.3
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 2.8e-195 686.0 652 56.7
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.1e-194 684.1 650 57.7
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 3.1e-194 682.6 651 56.5
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 1.2e-193 680.6 644 56.5
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 1.2e-193 680.6 644 56.5
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 2.0e-193 679.9 655 56.6
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 7.6e-193 677.9 648 56.3
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 9.9e-193 677.6 652 56.4
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 2.2e-192 676.4 641 55.4
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 2.9e-192 676.0 650 56.6
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 8.4e-192 674.5 642 56.5
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 6.0e-190 668.3 650 55.5
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 2.3e-189 666.4 650 55.4
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 1.9e-188 663.3 649 55.9
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 7.3e-188 661.4 608 59.0
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 2.1e-187 659.8 650 55.4
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.1e-186 657.5 648 55.4
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 7.6e-185 651.4 669 53.8
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 9.9e-185 651.0 644 56.2
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 6.4e-184 648.3 563 61.8
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.4e-183 646.4 649 55.8
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 7.1e-183 644.8 585 59.7
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 7.9e-182 641.3 650 54.2
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 2.8e-179 632.9 647 54.1
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.8e-179 632.9 683 51.5
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.1e-178 630.9 490 64.5
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 3.0e-173 612.8 684 51.9
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 2.7e-166 589.7 660 50.3
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 6.1e-166 588.6 539 55.1
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 7.9e-166 588.2 649 52.5
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.9e-165 585.9 495 61.0
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 1.4e-162 577.4 529 57.7
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 7.7e-161 571.6 651 49.3
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 2.5e-159 566.6 495 59.0
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 7.2e-159 565.1 705 47.2
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 2.1e-158 563.5 533 58.0
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.5e-153 547.4 552 54.7
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.3e-144 517.7 594 50.5
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.2e-142 511.1 487 59.3
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.6e-134 483.0 662 43.2
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 2.5e-119 433.7 529 48.4
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 5.7e-116 422.5 766 36.9
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 5.9e-113 412.5 685 39.1
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.0e-100 370.9 384 57.3
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.9e-98 364.4 590 40.0
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 1.5e-95 354.8 290 59.3
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 4.7e-94 349.7 328 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 2.4e-90 337.4 655 35.4
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.4e-90 337.4 333 58.0
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 2.0e-84 317.8 287 63.4
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 7.8e-81 305.8 355 50.4
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 1.7e-80 304.7 493 38.3
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 2.8e-78 297.4 284 59.2
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.9e-71 274.6 283 55.8
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 9.6e-71 272.3 427 43.3
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 4.8e-70 270.0 332 47.9
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.3e-63 247.3 204 60.8
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 6.0e-57 226.5 169 65.7
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 5.7e-55 219.9 153 66.7
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 6.1e-49 199.9 384 39.3
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 2.2e-46 191.4 198 54.5
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 7.4e-39 166.4 155 52.9
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 2.6e-36 157.9 252 37.3
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 5.5e-34 150.2 636 27.4
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.6e-33 148.7 112 61.6
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 8.8e-32 142.9 176 50.0
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 6.5e-19 100.1 129 52.7
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 3.2e-18 97.8 159 40.9
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.4e-15 87.8 94 51.1
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 3.4e-15 87.8 64 67.2
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 4.1e-13 80.9 64 62.5
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 1.6e-12 79.0 112 45.5
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.6e-12 79.0 55 74.5
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 1.3e-11 75.9 112 44.6
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.7e-11 75.5 49 73.5
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.9e-11 74.7 55 60.0
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 6.5e-11 73.6 105 39.0
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 5.7e-07 60.5 99 38.4


User provided reference genes

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