Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 2.2e-216 755.4 393 100.0
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-35 155.2 371 33.4
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 3.5e-28 130.2 375 29.9
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-26 124.8 375 29.6
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-25 121.3 268 32.8
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 1.8e-24 117.9 195 39.0
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 4.0e-24 116.7 195 41.0
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 3.4e-23 113.6 216 35.6
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 4.5e-23 113.2 194 39.2
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 9.9e-23 112.1 195 37.4
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 2.9e-22 110.5 195 36.9
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 2.9e-22 110.5 195 37.4
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 3.8e-22 110.2 148 41.9
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 8.4e-22 109.0 195 36.9
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 8.4e-22 109.0 191 37.7
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 4.2e-21 106.7 214 35.0
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 7.1e-21 105.9 351 29.9
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 7.1e-21 105.9 134 44.8
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 9.3e-21 105.5 143 42.7
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 9.3e-21 105.5 143 42.0
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 1.6e-20 104.8 195 37.4
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 3.5e-20 103.6 195 37.9
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 6.0e-20 102.8 195 36.4
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 6.0e-20 102.8 137 45.3
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 7.9e-20 102.4 195 37.9
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 7.9e-20 102.4 213 33.3
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 1.3e-19 101.7 148 41.2
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 2.3e-19 100.9 148 40.5
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 3.0e-19 100.5 217 35.9
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 3.0e-19 100.5 195 35.9
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 3.0e-19 100.5 134 42.5
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 3.0e-19 100.5 148 41.2
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 3.9e-19 100.1 195 35.9
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 5.1e-19 99.8 195 36.4
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 6.7e-19 99.4 133 42.1
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 8.7e-19 99.0 195 35.4
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 8.7e-19 99.0 133 40.6
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 1.1e-18 98.6 216 32.9
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 1.9e-18 97.8 195 35.4
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 1.9e-18 97.8 213 32.9
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.5e-18 97.4 195 35.9
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 2.5e-18 97.4 195 36.4
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 3.3e-18 97.1 230 34.3
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 3.3e-18 97.1 153 37.9
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 4.3e-18 96.7 149 42.3
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 4.3e-18 96.7 195 35.9
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 5.6e-18 96.3 230 31.7
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 5.6e-18 96.3 195 36.4
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 7.4e-18 95.9 149 42.3
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 7.4e-18 95.9 195 38.5
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 7.4e-18 95.9 133 41.4
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 7.4e-18 95.9 195 35.4
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 9.6e-18 95.5 195 36.4
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 9.6e-18 95.5 149 42.3
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 1.3e-17 95.1 197 35.5
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 2.1e-17 94.4 149 42.3
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 2.8e-17 94.0 149 42.3
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 6.2e-17 92.8 192 35.9
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 8.1e-17 92.4 195 36.9
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 8.1e-17 92.4 148 39.9
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 8.1e-17 92.4 195 34.4
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 1.1e-16 92.0 196 36.2
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 1.1e-16 92.0 196 36.2
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 1.1e-16 92.0 153 37.9
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 1.1e-16 92.0 195 35.4
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 1.4e-16 91.7 149 41.6
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 1.4e-16 91.7 149 41.6
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 1.4e-16 91.7 239 30.5
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 3.1e-16 90.5 143 37.8
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 5.3e-16 89.7 195 32.8
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 5.3e-16 89.7 229 36.2
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 5.3e-16 89.7 134 38.1
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 6.9e-16 89.4 143 39.9
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 6.9e-16 89.4 134 38.1
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 6.9e-16 89.4 134 38.1
PSO782G3231 Papaver somniferum HOM05D023650 ORTHO05D026023 6.9e-16 89.4 131 38.2
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 6.9e-16 89.4 142 38.7
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 9.0e-16 89.0 195 32.8
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 9.0e-16 89.0 195 35.4
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 1.5e-15 88.2 126 42.9
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.5e-15 88.2 195 34.4
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 2.0e-15 87.8 118 44.9
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 2.6e-15 87.4 213 34.7
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 3.4e-15 87.0 135 41.5
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 3.4e-15 87.0 148 37.2
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 4.5e-15 86.7 142 37.3
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 4.5e-15 86.7 195 33.8
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 7.6e-15 85.9 143 35.7
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 1.3e-14 85.1 212 32.5
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 2.2e-14 84.3 218 30.7
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.9e-13 81.3 149 36.9
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 1.9e-13 81.3 143 40.6
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 2.4e-13 80.9 135 37.0
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 3.2e-13 80.5 106 45.3
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 1.2e-12 78.6 106 43.4
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.2e-12 78.6 105 42.9
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 1.6e-12 78.2 126 38.1
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 3.5e-12 77.0 206 30.6
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 4.6e-12 76.6 139 38.1
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 4.6e-12 76.6 107 47.7
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 6.0e-12 76.3 212 29.2
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 1.9e-10 71.2 106 41.5
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 1.9e-10 71.2 114 36.8
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 7.4e-10 69.3 105 46.7
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.1e-09 67.8 271 26.9
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 3.7e-09 67.0 105 37.1
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 2.9e-06 57.4 106 35.8
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 6.5e-06 56.2 72 44.4


User provided reference genes

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