Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.9e-68 262.3 129 100.0
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 5.1e-61 237.7 129 91.5
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.6e-22 108.6 129 51.9
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.7e-22 108.2 125 50.4
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.0e-21 107.1 130 49.2
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.3e-21 105.9 139 48.2
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.0e-21 105.1 130 49.2
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.2e-21 104.8 131 48.9
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 8.9e-21 104.0 130 50.8
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.2e-20 103.6 133 48.9
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.5e-20 103.2 129 51.9
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 2.6e-20 102.4 127 48.0
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 3.4e-20 102.1 129 48.8
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.4e-20 102.1 126 46.0
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 3.4e-20 102.1 131 48.1
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 7.5e-20 100.9 131 45.8
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 9.8e-20 100.5 130 43.8
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-19 100.1 130 47.7
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.7e-19 99.8 127 48.8
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.9e-19 99.0 138 43.5
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.9e-19 99.0 125 47.2
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 6.4e-19 97.8 131 45.8
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 8.3e-19 97.4 137 43.8
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.4e-18 96.7 128 46.1
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.4e-18 95.9 120 45.0
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 2.4e-18 95.9 144 43.1
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 2.4e-18 95.9 126 46.0
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.1e-18 95.1 128 45.3
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 4.1e-18 95.1 124 47.6
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 5.4e-18 94.7 133 45.1
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 7.0e-18 94.4 132 46.2
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 9.2e-18 94.0 137 42.3
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 9.2e-18 94.0 132 45.5
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 9.2e-18 94.0 132 45.5
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 9.2e-18 94.0 132 46.2
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.2e-17 93.6 132 43.9
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.7e-17 92.4 131 43.5
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 3.5e-17 92.0 130 46.9
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.5e-17 92.0 129 45.7
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 3.5e-17 92.0 131 45.0
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 4.6e-17 91.7 139 42.4
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 4.6e-17 91.7 134 44.8
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 7.8e-17 90.9 131 43.5
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 7.8e-17 90.9 81 59.3
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.0e-16 90.5 130 43.1
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.0e-16 90.5 140 43.6
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.0e-16 90.5 129 43.4
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.3e-16 90.1 130 45.4
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.3e-16 90.1 128 43.8
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.3e-16 90.1 104 51.9
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.7e-16 89.7 81 58.0
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.9e-16 88.6 133 42.1
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.9e-16 88.6 101 51.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.9e-16 88.6 101 51.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.9e-16 88.6 101 51.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.9e-16 88.6 101 51.5
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 3.9e-16 88.6 126 48.4
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 3.9e-16 88.6 127 40.2
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 5.0e-16 88.2 126 42.1
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 5.0e-16 88.2 126 44.4
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.1e-15 87.0 132 41.7
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.1e-15 87.0 114 45.6
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 1.1e-15 87.0 127 41.7
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.1e-15 87.0 110 46.4
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.1e-15 87.0 139 41.0
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.5e-15 86.7 134 41.8
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.3e-15 85.5 82 53.7
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 3.3e-15 85.5 127 45.7
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 9.5e-15 84.0 127 40.2
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 9.5e-15 84.0 126 39.7
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.2e-14 83.6 91 45.1
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.6e-14 83.2 128 39.1
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.6e-14 83.2 130 41.5
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.1e-14 82.8 128 43.0
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.8e-14 82.4 131 42.0
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.8e-14 82.4 129 42.6
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 2.8e-14 82.4 130 42.3
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 3.6e-14 82.0 115 43.5
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 4.7e-14 81.6 132 40.2
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 6.2e-14 81.3 126 43.7
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.2e-14 81.3 92 50.0
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 8.0e-14 80.9 135 40.7
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.1e-13 80.5 135 40.7
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.1e-13 80.5 134 41.0
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.1e-13 80.5 81 51.9
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.1e-13 80.5 127 41.7
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.3e-13 79.3 131 42.0
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.1e-13 79.0 127 38.6
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 5.2e-13 78.2 131 38.2
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.2e-13 78.2 126 42.9
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 6.8e-13 77.8 96 47.9
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 8.9e-13 77.4 134 40.3
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 8.9e-13 77.4 132 40.9
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.2e-12 77.0 114 41.2
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.2e-12 77.0 134 40.3
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-12 76.6 98 42.9
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-12 76.6 98 42.9
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.5e-12 76.6 81 48.1
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.5e-12 76.6 134 40.3
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.5e-12 76.6 80 51.2
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.5e-12 76.6 128 39.1
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.0e-12 76.3 86 45.3
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 2.6e-12 75.9 91 44.0
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 2.6e-12 75.9 91 44.0
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 3.4e-12 75.5 87 50.6
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 3.4e-12 75.5 133 38.3
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 3.4e-12 75.5 127 38.6
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.4e-12 75.5 125 42.4
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.4e-12 75.5 115 39.1
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.4e-12 75.1 98 42.9
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.4e-12 75.1 126 44.4
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 7.5e-12 74.3 98 42.9
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 7.5e-12 74.3 83 44.6
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 7.5e-12 74.3 133 40.6
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 9.8e-12 73.9 130 39.2
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 9.8e-12 73.9 83 50.6
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 9.8e-12 73.9 125 38.4
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 9.8e-12 73.9 87 44.8
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.3e-11 73.6 140 39.3
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.7e-11 73.2 86 44.2
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.7e-11 73.2 98 42.9
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.2e-11 72.8 88 52.3
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.9e-11 72.4 108 42.6
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 2.9e-11 72.4 83 49.4
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.7e-11 72.0 115 38.3
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 4.9e-11 71.6 95 44.2
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 1.4e-10 70.1 130 38.5
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 1.9e-10 69.7 128 39.1
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.9e-10 69.7 81 46.9
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 2.4e-10 69.3 115 38.3
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.4e-10 69.3 127 37.8
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 3.2e-10 68.9 129 39.5
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 3.2e-10 68.9 114 40.4
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.1e-10 68.6 74 45.9
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 9.2e-10 67.4 78 42.3
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 1.2e-09 67.0 115 37.4
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.2e-09 67.0 139 36.0
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.6e-09 66.6 119 37.0
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 6.0e-09 64.7 82 42.7
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 6.0e-09 64.7 116 37.9
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 6.0e-09 64.7 116 37.9
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.8e-09 64.3 101 39.6
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 7.8e-09 64.3 83 43.4
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 7.8e-09 64.3 111 36.0
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.0e-08 63.9 46 60.9
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.0e-08 63.9 102 40.2
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.3e-08 63.5 116 36.2
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-08 63.5 116 37.9
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.3e-08 63.5 116 37.9
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.7e-08 63.2 134 32.8
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.3e-08 62.8 100 36.0
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.3e-08 62.8 82 41.5
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 3.9e-08 62.0 99 35.4
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 5.0e-08 61.6 115 35.7
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 5.0e-08 61.6 82 39.0
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 5.0e-08 61.6 82 39.0
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 5.0e-08 61.6 82 39.0
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 5.0e-08 61.6 82 41.5
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.0e-08 61.6 91 38.5
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.0e-08 61.6 91 40.7
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 6.6e-08 61.2 82 39.0
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 6.6e-08 61.2 95 38.9
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 6.6e-08 61.2 80 37.5
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 8.6e-08 60.8 95 36.8
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.1e-07 60.5 89 39.3
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.1e-07 60.5 82 40.2
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.1e-07 60.5 82 40.2
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.1e-07 60.5 103 35.9
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.5e-07 59.3 85 40.0
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.3e-07 58.9 82 39.0
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.3e-07 58.5 91 39.6
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 5.6e-07 58.2 82 37.8
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.6e-07 58.2 100 40.0
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-06 57.0 75 37.3
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.6e-06 56.6 101 32.7
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.6e-06 56.6 80 36.2
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 2.1e-06 56.2 76 34.2
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 3.6e-06 55.5 81 39.5


User provided reference genes

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