Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 3.1e-139 498.4 250 100.0
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 4.2e-136 488.0 251 98.0
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 9.1e-46 188.0 259 46.7
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.0e-45 186.8 258 47.3
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 5.5e-43 178.7 258 48.1
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 5.1e-41 172.2 253 45.5
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 2.4e-38 163.3 263 46.4
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 9.1e-38 161.4 251 46.2
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.2e-37 161.0 259 44.0
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 2.0e-37 160.2 260 45.0
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.0e-36 157.9 260 45.4
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 3.8e-36 156.0 261 43.7
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 6.5e-36 155.2 251 40.6
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.4e-35 154.1 256 44.5
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 5.5e-35 152.1 252 42.1
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 9.4e-35 151.4 257 44.7
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.1e-34 150.2 240 44.2
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 6.1e-34 148.7 258 43.4
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.4e-33 147.5 252 41.7
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.0e-33 146.4 263 42.6
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 3.0e-33 146.4 252 40.5
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 6.7e-33 145.2 253 38.3
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 5.7e-32 142.1 262 43.5
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 9.7e-32 141.4 254 39.8
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 1.3e-31 141.0 268 41.0
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 1.7e-31 140.6 260 40.8
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.7e-31 140.6 260 43.5
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 2.2e-31 140.2 257 39.7
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.7e-31 139.4 252 42.1
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 4.8e-31 139.0 219 44.7
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 6.3e-31 138.7 241 42.3
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 6.3e-31 138.7 257 41.2
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 3.1e-30 136.3 256 42.6
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 4.1e-30 136.0 247 40.5
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 5.3e-30 135.6 252 41.3
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 5.3e-30 135.6 250 42.0
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 5.3e-30 135.6 248 44.0
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.2e-29 134.4 243 40.7
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 2.0e-29 133.7 266 38.7
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 2.6e-29 133.3 243 40.7
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.6e-29 133.3 243 40.7
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 4.5e-29 132.5 255 42.4
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 4.5e-29 132.5 277 41.2
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 7.7e-29 131.7 254 41.3
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.7e-28 130.6 254 40.9
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 1.7e-28 130.6 241 38.6
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 1.7e-28 130.6 251 41.0
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 6.5e-28 128.6 243 40.3
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 6.5e-28 128.6 277 41.9
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.2e-27 126.3 252 38.5
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.5e-27 125.6 243 39.9
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 7.2e-27 125.2 258 39.1
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 7.2e-27 125.2 241 38.2
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 7.2e-27 125.2 272 38.6
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 7.2e-27 125.2 250 38.4
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 9.4e-27 124.8 253 37.2
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-26 124.4 262 38.9
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 2.1e-26 123.6 263 37.3
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 3.6e-26 122.9 265 35.8
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.0e-25 119.8 247 40.1
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 4.0e-25 119.4 269 38.3
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 6.7e-25 118.6 258 36.8
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 6.7e-25 118.6 253 36.8
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 8.8e-25 118.2 267 36.0
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 8.8e-25 118.2 263 37.6
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.2e-24 117.9 248 39.1
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.2e-24 117.9 248 37.1
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 1.5e-24 117.5 244 41.4
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 3.3e-24 116.3 251 37.8
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 7.5e-24 115.2 242 38.4
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.2e-23 113.6 257 38.9
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 2.8e-23 113.2 205 41.0
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 4.8e-23 112.5 245 37.1
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 6.3e-23 112.1 240 37.9
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 6.3e-23 112.1 227 40.1
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 6.3e-23 112.1 228 38.6
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 6.3e-23 112.1 253 34.4
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 6.3e-23 112.1 269 33.8
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 8.2e-23 111.7 257 36.2
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.1e-22 111.3 248 36.7
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.4e-22 110.9 249 34.1
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 1.8e-22 110.5 260 35.8
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 2.4e-22 110.2 258 34.9
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 3.1e-22 109.8 250 37.2
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 3.1e-22 109.8 243 36.2
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 4.1e-22 109.4 249 34.9
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 5.3e-22 109.0 255 34.9
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 7.0e-22 108.6 247 36.0
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 1.6e-21 107.5 248 35.9
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 2.0e-21 107.1 256 38.7
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 3.5e-21 106.3 255 35.7
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 4.5e-21 105.9 244 35.2
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 4.5e-21 105.9 247 32.4
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 7.7e-21 105.1 254 33.9
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 7.7e-21 105.1 256 37.9
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 1.3e-20 104.4 230 37.8
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 1.7e-20 104.0 245 35.5
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 5.0e-20 102.4 257 33.1
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 5.0e-20 102.4 249 34.9
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 1.1e-19 101.3 258 36.0
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.5e-19 100.9 251 34.7
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.5e-19 100.9 251 33.9
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 1.5e-19 100.9 250 37.2
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 5.5e-19 99.0 245 35.5
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 2.7e-18 96.7 247 35.2
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 2.3e-17 93.6 241 34.4
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 6.8e-17 92.0 249 34.1
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 6.8e-17 92.0 249 33.7
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 6.8e-17 92.0 244 34.0
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 8.8e-17 91.7 242 30.6
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 8.8e-17 91.7 242 30.6
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.2e-16 91.3 242 34.3
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 4.4e-16 89.4 244 33.6
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 5.7e-16 89.0 151 41.1
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 4.8e-15 85.9 233 33.0
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 6.3e-15 85.5 251 31.5
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.2e-13 81.3 252 29.8
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 1.6e-13 80.9 245 32.7
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 1.6e-13 80.9 247 33.2
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 2.0e-13 80.5 287 29.3
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 2.7e-13 80.1 247 34.8
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 4.5e-13 79.3 244 33.2
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 7.7e-13 78.6 250 30.4
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 1.3e-12 77.8 257 30.4
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 1.3e-12 77.8 257 30.4
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 1.3e-12 77.8 257 30.4
QL12p025899 Quercus lobata HOM05D005081 ORTHO05D005506 1.3e-12 77.8 253 34.0
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 1.7e-12 77.4 173 34.1
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.9e-12 76.6 289 29.1
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 3.8e-12 76.3 257 30.0
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 6.5e-12 75.5 176 31.8
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 1.9e-11 73.9 124 42.7
Glyma.04G077700 Glycine max HOM05D027503 ORTHO05D005506 5.5e-11 72.4 190 36.3
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.2e-10 71.2 224 31.7
Glyma.06G078900 Glycine max HOM05D027503 ORTHO05D005506 1.8e-09 67.4 120 41.7
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 3.0e-09 66.6 203 30.5
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 4.0e-09 66.2 112 39.3
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.2e-08 64.7 139 33.8
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.5e-08 64.3 135 35.6
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 2.0e-08 63.9 106 39.6
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 2.6e-08 63.5 109 40.4
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 5.7e-08 62.4 106 39.6
TAR636G0195 Trochodendron aralioides HOM05D000402 ORTHO05D000263 9.8e-08 61.6 34 91.2
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 3.7e-07 59.7 107 42.1
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 9.2e-06 55.1 98 41.8


User provided reference genes

Program Settings