Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 0.0e+00 1288.5 661 100.0
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 0.0e+00 1268.8 661 98.6
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.1e-279 966.5 633 80.7
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.1e-271 937.9 626 79.4
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.0e-270 935.6 584 83.6
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 3.5e-270 934.9 652 75.9
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 4.5e-270 934.5 652 76.1
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 5.0e-269 931.0 584 82.2
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 3.2e-268 928.3 636 77.8
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 9.4e-268 926.8 640 76.7
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 3.6e-267 924.9 604 79.3
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.7e-267 924.5 629 78.4
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 4.7e-267 924.5 641 76.0
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 6.1e-267 924.1 616 80.5
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.0e-266 923.3 628 77.4
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 3.0e-266 921.8 626 77.6
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 4.0e-266 921.4 640 75.8
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.5e-265 919.5 608 78.8
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 2.0e-265 919.1 652 74.8
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 2.0e-265 919.1 649 75.3
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 4.4e-265 917.9 622 78.3
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 9.8e-265 916.8 650 75.2
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.7e-264 916.0 625 76.8
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.7e-264 916.0 621 78.3
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.1e-263 911.8 612 78.3
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 4.1e-263 911.4 586 79.7
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 4.1e-263 911.4 650 75.1
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 4.1e-263 911.4 656 74.7
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 9.1e-263 910.2 594 79.1
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 9.1e-263 910.2 617 78.4
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 4.5e-262 907.9 662 74.5
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 4.5e-262 907.9 604 78.0
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.9e-262 907.5 634 75.1
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.3e-261 906.4 650 75.1
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.7e-261 906.0 651 73.9
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.7e-261 906.0 604 78.3
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.9e-261 905.2 634 76.3
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 8.5e-261 903.7 634 74.8
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.9e-260 902.5 650 73.7
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 2.5e-260 902.1 635 75.3
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.5e-260 902.1 632 77.4
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.2e-260 901.7 624 75.6
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 9.4e-260 900.2 594 77.9
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.6e-259 899.4 625 75.7
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.6e-259 899.4 650 73.5
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.0e-258 896.7 634 75.7
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.8e-258 896.0 650 73.4
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 3.4e-257 891.7 633 75.2
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.4e-257 891.7 625 75.4
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.7e-257 891.0 608 77.3
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.2e-254 883.2 623 75.4
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.2e-254 883.2 629 74.4
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 4.5e-254 881.3 611 75.8
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 5.9e-254 880.9 623 75.0
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.0e-253 880.2 618 75.6
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 3.8e-253 878.2 624 74.7
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 5.0e-253 877.9 619 75.4
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 5.5e-252 874.4 619 75.3
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.2e-251 873.2 582 78.0
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.0e-250 870.2 618 74.8
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.3e-250 869.0 582 77.7
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.5e-249 866.3 589 77.1
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.5e-249 866.3 619 74.2
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.0e-249 865.9 548 83.0
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 2.6e-249 865.5 620 74.2
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 5.7e-249 864.4 620 74.5
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 9.8e-249 863.6 635 72.4
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.9e-248 862.1 597 75.5
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 3.7e-248 861.7 590 76.4
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.3e-248 860.9 615 74.0
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 3.9e-245 851.7 626 73.6
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 5.0e-245 851.3 609 74.1
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 4.3e-244 848.2 620 72.9
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 5.6e-244 847.8 632 72.0
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 2.8e-243 845.5 605 73.7
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 6.8e-242 840.9 624 71.8
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 6.8e-242 840.9 625 72.8
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.5e-241 839.7 625 70.4
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.6e-241 839.0 620 71.5
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 6.4e-240 834.3 576 76.4
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.1e-239 833.6 654 68.5
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 7.0e-239 830.9 618 71.8
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.6e-238 829.7 530 80.6
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.0e-238 829.3 604 71.7
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 6.0e-238 827.8 597 72.9
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 7.8e-238 827.4 622 71.5
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.0e-237 827.0 633 70.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.1e-236 823.5 584 73.5
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 9.5e-236 820.5 589 73.2
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 4.7e-235 818.1 626 69.5
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 4.7e-235 818.1 580 73.8
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 6.2e-235 817.8 589 72.8
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.1e-234 817.0 589 73.3
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.1e-234 817.0 627 69.5
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 8.9e-234 813.9 627 69.9
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.2e-233 813.5 585 73.2
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.7e-232 809.7 590 72.2
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 2.9e-232 808.9 694 64.8
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.9e-231 806.2 580 72.6
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.9e-231 806.2 589 72.2
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.9e-231 806.2 589 72.2
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 4.1e-231 805.1 603 69.2
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.2e-230 803.5 626 68.5
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.6e-230 803.1 628 69.4
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 1.7e-229 799.7 560 73.8
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.7e-229 799.7 560 73.8
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.7e-229 799.7 651 68.2
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 3.9e-229 798.5 604 69.5
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 8.6e-229 797.3 585 71.5
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 7.3e-228 794.3 616 69.0
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.4e-226 790.0 624 68.1
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 5.2e-226 788.1 616 68.8
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.0e-225 786.2 634 69.6
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-224 783.5 613 68.8
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.3e-224 783.5 613 68.8
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 8.4e-224 780.8 593 71.8
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 9.2e-223 777.3 640 66.9
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 9.6e-220 767.3 541 74.7
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.2e-217 760.4 609 67.7
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 5.8e-217 758.1 585 69.6
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 7.6e-217 757.7 593 71.2
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.7e-213 746.5 600 67.3
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 3.0e-213 745.7 532 72.7
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 6.6e-213 744.6 470 80.6
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 7.3e-212 741.1 639 64.0
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 3.1e-210 735.7 567 67.7
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.9e-210 734.6 517 72.0
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.6e-209 732.6 524 73.3
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.6e-209 732.6 589 67.4
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 6.4e-208 728.0 598 63.9
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 7.6e-201 704.5 529 70.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.2e-199 698.7 544 67.5
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.5e-199 698.4 609 63.5
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.2e-198 697.2 602 64.8
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.3e-197 693.7 431 82.1
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.3e-197 693.7 429 82.8
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.8e-197 693.3 544 67.1
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.4e-196 688.0 635 60.8
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 6.2e-195 684.9 418 83.3
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 1.1e-191 674.1 525 68.6
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 5.5e-191 671.8 421 82.4
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.9e-190 667.9 536 65.5
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.3e-189 667.2 499 69.1
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.8e-184 649.0 539 63.3
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.0e-176 624.4 479 71.6
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 8.8e-165 584.7 584 53.3
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.4e-156 555.8 486 59.5
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 7.5e-156 555.1 388 73.2
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.2e-147 526.9 362 77.1
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 9.4e-143 511.5 534 56.2
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.0e-137 493.8 360 71.9
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.3e-125 453.8 467 56.3
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 8.9e-109 398.7 270 75.2
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.5e-76 290.0 157 92.4
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 3.2e-66 257.3 145 89.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 4.1e-45 187.2 171 57.3
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 2.6e-44 184.5 171 56.1
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.2e-42 177.6 168 55.4
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.1e-41 174.9 168 54.8
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 4.0e-40 170.6 123 69.9
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.2e-38 164.9 98 83.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 4.2e-26 124.0 99 64.6
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.2e-23 115.9 94 62.8
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 3.4e-23 114.4 115 56.5
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.9e-20 103.6 60 86.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 2.3e-16 91.7 97 57.7
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.2e-16 90.5 525 24.2
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.8e-16 90.1 318 28.0
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.2e-15 89.4 151 38.4
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 2.6e-15 88.2 86 55.8
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.7e-14 85.5 70 71.4
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.4e-13 81.6 229 30.6
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-10 72.4 193 32.6
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.7e-09 67.4 77 55.8
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.1e-08 66.2 75 49.3
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 5.2e-08 63.9 53 54.7


User provided reference genes

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