Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 0.0e+00 1230.7 613 100.0
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 2.5e-230 802.4 614 64.8
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 4.5e-224 781.6 611 65.6
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 6.3e-218 761.1 531 71.4
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 2.3e-215 752.7 624 62.8
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 6.8e-212 741.1 610 62.6
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 2.0e-211 739.6 611 62.7
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 4.4e-211 738.4 611 62.0
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 5.4e-209 731.5 614 62.1
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 5.0e-207 724.9 610 62.1
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 8.6e-207 724.2 596 62.9
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.6e-205 719.9 609 61.1
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 8.9e-204 714.1 607 61.6
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.5e-203 713.4 607 60.6
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 9.8e-203 710.7 612 61.1
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 8.3e-202 707.6 628 59.7
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 2.1e-200 703.0 611 60.9
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 6.0e-200 701.4 629 59.3
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 1.3e-199 700.3 616 59.4
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 2.3e-199 699.5 588 61.4
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.9e-198 696.4 606 60.7
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 1.2e-197 693.7 615 59.5
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 2.8e-197 692.6 606 58.3
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.1e-196 690.6 612 59.3
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 6.8e-196 688.0 602 59.0
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 1.7e-194 683.3 495 68.1
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-192 677.2 595 58.8
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-192 676.4 595 58.7
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 3.5e-192 675.6 584 59.1
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 4.6e-192 675.2 606 55.9
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 4.6e-192 675.2 643 55.1
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 3.0e-191 672.5 614 57.8
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 3.9e-191 672.2 607 57.7
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 1.1e-190 670.6 605 55.2
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 1.1e-190 670.6 616 57.1
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 5.6e-190 668.3 626 56.2
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 5.6e-190 668.3 608 56.6
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.6e-190 667.5 595 58.3
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 4.7e-189 665.2 518 64.9
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 1.1e-188 664.1 609 54.8
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 4.0e-188 662.1 500 67.4
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 4.0e-188 662.1 609 57.8
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.9e-188 661.0 615 56.6
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 8.9e-188 661.0 617 57.9
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 1.5e-187 660.2 609 57.3
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 4.4e-187 658.7 605 56.9
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 7.6e-187 657.9 557 59.8
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 9.9e-187 657.5 617 55.4
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.7e-186 656.8 603 55.9
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 2.9e-186 656.0 600 56.8
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 3.8e-186 655.6 622 56.3
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 4.9e-186 655.2 609 57.1
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 8.4e-186 654.4 596 58.6
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 2.4e-185 652.9 574 57.8
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 4.2e-185 652.1 600 56.7
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 7.1e-185 651.4 618 55.5
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 7.1e-185 651.4 610 57.0
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 9.3e-185 651.0 600 56.2
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 9.3e-185 651.0 610 56.9
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 1.6e-184 650.2 600 55.7
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 4.6e-184 648.7 600 56.5
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 6.0e-184 648.3 604 56.1
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-184 648.3 584 57.7
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 1.3e-183 647.1 578 56.2
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 3.0e-183 646.0 603 57.4
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 9.6e-182 641.0 580 57.6
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.6e-181 640.2 605 55.9
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.8e-180 636.7 610 56.4
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 2.4e-180 636.3 615 56.1
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.2e-179 634.0 611 55.6
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 1.2e-179 634.0 585 56.6
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 2.0e-179 633.3 608 56.1
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 2.9e-178 629.4 618 54.9
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 1.4e-177 627.1 606 55.0
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 4.2e-177 625.5 514 60.7
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 7.1e-177 624.8 578 55.5
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.1e-174 617.5 478 66.3
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 3.3e-174 615.9 656 50.6
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 5.6e-174 615.1 614 52.3
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 6.4e-170 601.7 600 52.3
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 9.3e-169 597.8 668 48.1
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 4.0e-164 582.4 573 52.4
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 9.0e-164 581.3 616 52.1
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.5e-163 578.9 621 51.9
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 6.5e-162 575.1 546 56.2
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 1.6e-160 570.5 507 58.4
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 1.3e-159 567.4 499 61.1
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 1.3e-159 567.4 603 52.1
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 3.3e-158 562.8 470 57.2
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 2.8e-157 559.7 587 51.4
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 3.1e-156 556.2 476 56.5
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 2.5e-153 546.6 497 56.3
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 5.3e-148 528.9 451 59.0
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 3.8e-146 522.7 460 57.8
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 6.5e-146 521.9 441 59.4
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 4.2e-145 519.2 403 61.8
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 5.3e-132 475.7 637 42.2
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 7.0e-132 475.3 351 67.0
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 1.3e-125 454.5 647 41.6
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 3.1e-124 449.9 642 40.5
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 1.6e-120 437.6 604 42.9
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 1.5e-113 414.5 372 57.8
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 5.7e-110 402.5 344 61.3
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 2.0e-107 394.0 490 48.4
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 2.1e-104 384.0 467 43.3
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 8.6e-98 362.1 398 46.2
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 5.6e-97 359.4 327 59.3
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 3.4e-86 323.6 319 53.0
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 2.0e-70 271.2 326 44.2
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 5.4e-68 263.1 196 61.7
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 5.1e-66 256.5 398 36.9
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.6e-64 251.5 175 65.7
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 3.8e-61 240.4 136 86.0
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 7.1e-60 236.1 251 52.2
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 2.7e-59 234.2 154 66.9
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.6e-54 216.1 181 58.6
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 9.9e-54 215.7 213 53.1
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-53 215.3 160 62.5
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-53 215.3 160 62.5
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-53 215.3 160 62.5
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 4.3e-49 200.3 229 48.0
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 2.6e-46 191.0 225 50.2
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 2.9e-45 187.6 193 51.8
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 4.2e-44 183.7 177 50.3
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.2e-37 161.4 116 63.8
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 7.9e-35 152.9 520 27.9
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 8.2e-32 142.9 228 36.4
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 3.1e-31 141.0 224 38.8
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 9.1e-31 139.4 363 27.5
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 1.1e-28 132.5 151 55.0
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.4e-28 132.1 89 64.0
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 1.2e-27 129.0 170 39.4
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-25 122.5 181 41.4
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-25 122.5 181 41.4
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-25 122.5 181 41.4
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-25 122.5 181 41.4
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-25 122.5 181 41.4
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-25 122.5 181 41.4
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.6e-25 121.3 160 43.1
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.6e-25 121.3 160 43.1
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.6e-25 121.3 160 43.1
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.6e-25 121.3 160 43.1
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.6e-25 121.3 160 43.1
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.6e-25 121.3 160 43.1
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.6e-25 121.3 160 43.1
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 4.4e-25 120.6 136 41.9
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 5.9e-22 110.2 172 37.2
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 1.0e-18 99.4 140 45.0
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 2.3e-18 98.2 92 60.9
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 7.4e-17 93.2 105 60.0
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-14 85.5 164 34.8
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 3.5e-14 84.3 45 75.6
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 1.9e-12 78.6 180 33.3
MBI04_g15062_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.2e-09 69.3 166 35.5
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 1.3e-08 65.9 72 38.9
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 1.2e-06 59.3 70 50.0
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 4.5e-06 57.4 33 75.8


User provided reference genes

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