Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 4.0e-108 394.8 205 100.0
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 3.1e-100 368.6 205 94.1
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 1.3e-69 266.9 187 72.7
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 3.7e-69 265.4 185 75.1
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 6.2e-69 264.6 195 69.2
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 1.8e-68 263.1 181 75.1
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 3.1e-68 262.3 196 70.9
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 1.5e-67 260.0 162 79.0
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 1.1e-65 253.8 191 70.7
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 9.3e-65 250.8 181 71.3
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 1.6e-64 250.0 154 77.9
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 1.6e-64 250.0 176 72.2
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 3.5e-64 248.8 181 71.3
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 6.0e-64 248.1 154 77.3
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 6.0e-64 248.1 169 74.6
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 1.3e-63 246.9 194 68.0
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 1.8e-63 246.5 201 66.2
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 2.3e-63 246.1 176 71.6
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 3.0e-63 245.7 199 66.3
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 3.9e-63 245.4 182 69.8
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 5.1e-63 245.0 154 77.9
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 8.7e-63 244.2 186 68.8
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 1.1e-62 243.8 184 70.7
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 1.1e-62 243.8 157 77.1
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 1.1e-62 243.8 154 77.3
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 1.5e-62 243.4 178 70.2
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 1.9e-62 243.0 183 69.9
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 1.9e-62 243.0 177 71.8
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 1.9e-62 243.0 159 74.2
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 3.3e-62 242.3 171 73.1
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 9.6e-62 240.7 164 76.2
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 9.6e-62 240.7 185 70.3
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 1.6e-61 240.0 162 74.1
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 2.1e-61 239.6 205 62.9
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 2.1e-61 239.6 165 73.9
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 4.8e-61 238.4 157 75.8
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 8.2e-61 237.7 155 75.5
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 1.4e-60 236.9 188 66.5
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 2.4e-60 236.1 156 75.6
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 4.1e-60 235.3 197 62.4
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 1.5e-59 233.4 165 71.5
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 2.0e-59 233.0 168 70.8
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 2.6e-59 232.6 193 65.3
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 3.4e-59 232.3 166 72.3
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 3.4e-59 232.3 159 75.5
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 1.3e-58 230.3 157 74.5
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 1.3e-58 230.3 195 63.1
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.3e-58 230.3 168 69.0
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 2.9e-58 229.2 156 74.4
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 3.8e-58 228.8 190 64.2
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 8.5e-58 227.6 201 62.2
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 8.5e-58 227.6 158 73.4
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 1.4e-57 226.9 181 65.2
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 1.4e-57 226.9 194 66.0
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 4.2e-57 225.3 141 78.7
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 4.2e-57 225.3 199 63.8
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 7.2e-57 224.6 157 70.7
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 9.3e-57 224.2 208 60.1
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 1.2e-56 223.8 193 62.7
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 1.6e-56 223.4 166 68.1
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 1.6e-56 223.4 174 67.2
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 2.1e-56 223.0 194 61.3
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 2.7e-56 222.6 138 79.0
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 3.6e-56 222.2 226 58.0
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 3.6e-56 222.2 190 64.2
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 6.1e-56 221.5 197 60.4
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 7.9e-56 221.1 154 71.4
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 3.9e-55 218.8 196 61.7
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 8.7e-55 217.6 138 76.1
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 1.1e-54 217.2 144 75.7
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 4.3e-54 215.3 152 69.7
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 7.4e-54 214.5 154 70.8
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 2.8e-53 212.6 154 70.8
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 3.7e-53 212.2 162 67.9
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 4.8e-53 211.8 147 74.8
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 1.8e-52 209.9 177 64.4
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 5.3e-52 208.4 145 72.4
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 5.3e-52 208.4 194 60.3
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 5.3e-52 208.4 145 72.4
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 5.3e-52 208.4 145 72.4
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 5.3e-52 208.4 194 60.3
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 3.4e-51 205.7 131 77.1
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 1.3e-50 203.8 192 56.8
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 6.5e-50 201.4 132 76.5
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 1.2e-48 197.2 131 74.0
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 2.1e-48 196.4 133 69.9
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 4.6e-48 195.3 171 60.2
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 2.4e-44 183.0 103 89.3
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 5.9e-43 178.3 152 64.5
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 2.2e-42 176.4 186 53.8
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 5.5e-41 171.8 122 69.7
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 7.2e-41 171.4 107 81.3
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 1.6e-40 170.2 228 49.6
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 4.7e-40 168.7 104 82.7
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 8.8e-39 164.5 122 68.9
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 2.0e-38 163.3 97 83.5
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 4.1e-36 155.6 99 76.8
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 1.2e-35 154.1 102 74.5
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 3.5e-35 152.5 204 46.6
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 9.4e-33 144.4 109 66.1
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 2.7e-32 142.9 156 49.4
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 3.6e-32 142.5 144 55.6
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 4.0e-31 139.0 144 49.3
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 1.2e-30 137.5 105 65.7
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 2.0e-30 136.7 128 54.7
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 5.3e-28 128.6 79 82.3
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 1.9e-25 120.2 99 59.6
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 4.7e-24 115.5 71 85.9
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 4.7e-24 115.5 71 85.9
Nitab4.5_0001013g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 6.1e-24 115.2 75 73.3
HPP92_027923 Vanilla planifolia HOM05D006913 ORTHO05D008720 3.4e-22 109.4 65 83.1
Hma1.2p1_3252F.1_g334540 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 2.2e-21 106.7 140 52.1
HPP92_027922 Vanilla planifolia HOM05D006913 ORTHO05D008720 5.4e-20 102.1 85 58.8
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 5.2e-15 85.5 109 35.8
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 5.0e-10 68.9 39 76.9
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 5.0e-10 68.9 39 76.9


User provided reference genes

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