Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.3e-138 496.5 263 100.0
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 3.3e-123 445.3 258 92.6
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 7.0e-81 304.7 236 67.8
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 6.5e-79 298.1 234 67.1
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.1e-78 297.4 234 67.1
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 2.5e-78 296.2 234 65.4
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 3.6e-77 292.4 235 65.5
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 4.7e-77 292.0 232 64.2
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.0e-76 290.8 244 64.8
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 6.8e-76 288.1 235 64.7
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 8.8e-76 287.7 237 61.2
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 4.4e-75 285.4 241 63.9
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 4.4e-75 285.4 238 63.4
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 9.8e-75 284.3 244 62.7
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 2.8e-74 282.7 248 62.1
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 4.8e-74 282.0 235 63.8
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 1.1e-73 280.8 256 59.4
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.4e-73 280.4 241 58.9
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.8e-73 280.0 234 60.7
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.8e-73 280.0 238 63.0
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 9.1e-73 277.7 243 60.9
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 9.1e-73 277.7 237 60.3
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.2e-72 277.3 243 62.6
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 2.0e-72 276.6 228 64.9
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 2.7e-72 276.2 245 58.4
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.7e-72 276.2 247 59.1
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 2.7e-72 276.2 247 59.1
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 4.5e-72 275.4 246 58.5
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 7.7e-72 274.6 247 58.7
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.7e-71 273.5 239 60.3
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 2.3e-71 273.1 243 59.7
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 2.9e-71 272.7 241 60.6
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 5.0e-71 271.9 232 60.3
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 6.5e-71 271.6 248 59.7
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 8.6e-71 271.2 241 61.0
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 1.5e-70 270.4 200 70.5
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 2.5e-70 269.6 242 58.7
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 7.2e-70 268.1 246 61.0
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 9.5e-70 267.7 238 60.5
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.6e-69 266.9 244 59.4
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 2.8e-69 266.2 242 58.7
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 2.8e-69 266.2 246 60.6
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 4.7e-69 265.4 246 60.2
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 8.0e-69 264.6 244 59.0
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.4e-68 263.8 232 61.2
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.3e-68 263.1 248 58.5
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 3.0e-68 262.7 273 53.1
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 8.9e-68 261.2 200 67.5
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 8.9e-68 261.2 240 56.7
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 1.8e-65 253.4 203 63.5
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-65 252.3 237 53.2
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.6e-64 250.4 239 56.5
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 7.8e-64 248.1 200 64.5
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.7e-63 246.9 203 64.0
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 3.8e-63 245.7 236 56.4
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 1.9e-62 243.4 223 60.1
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.2e-61 240.7 238 53.8
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 2.1e-61 240.0 204 59.3
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.8e-61 239.6 232 53.9
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 6.1e-61 238.4 246 55.7
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 2.3e-60 236.5 238 52.5
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 4.0e-60 235.7 246 53.7
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.5e-59 233.8 236 53.4
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 2.0e-59 233.4 239 53.1
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 2.0e-59 233.4 239 53.1
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 3.4e-59 232.6 239 52.7
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.4e-59 232.6 244 51.6
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 9.8e-59 231.1 239 52.7
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 9.8e-59 231.1 239 52.7
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 9.8e-59 231.1 236 52.5
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 2.9e-58 229.6 246 52.4
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.9e-58 229.6 242 52.1
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 3.7e-58 229.2 248 52.0
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 2.4e-57 226.5 239 52.7
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 7.0e-57 224.9 244 52.0
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.6e-56 223.8 201 57.7
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.0e-56 223.4 202 56.9
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 4.6e-56 222.2 207 58.5
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 6.0e-56 221.9 223 52.0
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.0e-55 219.5 233 52.4
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 8.6e-55 218.0 292 46.6
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 2.5e-54 216.5 238 50.8
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 2.5e-54 216.5 237 49.8
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.6e-53 213.8 242 54.1
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 2.1e-53 213.4 201 57.2
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.4e-52 210.7 191 57.1
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 3.4e-51 206.1 235 50.2
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 8.3e-50 201.4 237 48.1
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 4.1e-49 199.1 237 47.7
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 3.5e-48 196.1 201 52.7
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.7e-47 193.7 233 47.2
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 2.5e-46 189.9 237 45.6
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.5e-46 189.9 236 47.5
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 3.1e-44 183.0 201 49.3
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 8.9e-44 181.4 230 46.5
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.0e-43 180.3 183 51.4
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 5.8e-43 178.7 234 43.2
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 4.9e-42 175.6 273 42.9
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.4e-41 173.3 237 43.9
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 7.1e-41 171.8 239 42.3
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 4.6e-40 169.1 172 54.1
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.0e-39 167.9 243 39.5
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.8e-37 159.8 244 38.9
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-34 151.0 253 39.1
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-32 144.4 233 38.6
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 6.0e-32 142.1 236 34.7
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.3e-31 141.0 155 50.3
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 3.0e-31 139.8 109 65.1
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-30 137.5 261 35.2
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 9.6e-30 134.8 124 54.8
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.2e-29 134.4 111 58.6
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-29 134.0 241 37.8
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 2.1e-29 133.7 120 56.7
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 8.1e-29 131.7 235 37.9
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 7.6e-27 125.2 197 39.1
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 9.9e-27 124.8 224 37.1
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 6.4e-26 122.1 242 33.9
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.6e-24 117.5 155 41.3
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 3.9e-23 112.8 110 55.5
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 3.9e-23 112.8 103 53.4
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 8.7e-23 111.7 104 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 9.0e-20 101.7 109 51.4
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 3.8e-18 96.3 213 33.8
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 6.4e-18 95.5 151 44.4
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.1e-16 90.5 171 37.4
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 3.0e-15 86.7 109 44.0
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.9e-14 84.0 109 43.1
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 4.8e-13 79.3 122 41.0
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 4.8e-13 79.3 122 41.0
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.7e-10 70.9 71 49.3
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 1.9e-09 67.4 109 39.4
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.7e-08 63.5 67 43.3
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 1.0e-07 61.6 76 40.8
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.8e-07 60.8 223 26.9
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 8.7e-07 58.5 115 35.7


User provided reference genes

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